Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | GU334_RS01055 | Genome accession | NZ_CP047628 |
| Coordinates | 205541..205936 (+) | Length | 131 a.a. |
| NCBI ID | WP_096039919.1 | Uniprot ID | A0AAE6YLF4 |
| Organism | Lactococcus raffinolactis strain Lr_19_14 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 200541..210936
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GU334_RS01035 (GU334_01035) | pepA | 202974..204059 (-) | 1086 | WP_167840975.1 | glutamyl aminopeptidase | - |
| GU334_RS01040 (GU334_01040) | - | 204198..204497 (+) | 300 | WP_167840976.1 | hypothetical protein | - |
| GU334_RS01045 (GU334_01045) | - | 204510..204827 (+) | 318 | WP_061773651.1 | thioredoxin family protein | - |
| GU334_RS01050 (GU334_01050) | ytpR | 204857..205480 (+) | 624 | WP_167840977.1 | YtpR family tRNA-binding protein | - |
| GU334_RS01055 (GU334_01055) | ssbA | 205541..205936 (+) | 396 | WP_096039919.1 | single-stranded DNA-binding protein | Machinery gene |
| GU334_RS01060 (GU334_01060) | - | 205970..207502 (+) | 1533 | WP_167840978.1 | CHAP domain-containing protein | - |
| GU334_RS01065 (GU334_01065) | - | 207787..208932 (+) | 1146 | WP_209452095.1 | CHAP domain-containing protein | - |
| GU334_RS01070 (GU334_01070) | groES | 209106..209390 (+) | 285 | WP_167840980.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14707.89 Da Isoelectric Point: 7.1673
>NTDB_id=414672 GU334_RS01055 WP_096039919.1 205541..205936(+) (ssbA) [Lactococcus raffinolactis strain Lr_19_14]
MLNKSLLIGRLTAQPEVKKTPTDKSVLRVTLAVSRQFKNADGQRDADFLTIIIWGKPAELFASYGKKGSLVSIEGELRTR
RYEDKAGVTHYVTEVLCHQFNLLESRAAVALRENQVETVTDVMLEAEDLPF
MLNKSLLIGRLTAQPEVKKTPTDKSVLRVTLAVSRQFKNADGQRDADFLTIIIWGKPAELFASYGKKGSLVSIEGELRTR
RYEDKAGVTHYVTEVLCHQFNLLESRAAVALRENQVETVTDVMLEAEDLPF
Nucleotide
Download Length: 396 bp
>NTDB_id=414672 GU334_RS01055 WP_096039919.1 205541..205936(+) (ssbA) [Lactococcus raffinolactis strain Lr_19_14]
ATGTTAAATAAAAGTTTACTAATTGGTCGTTTGACCGCACAGCCGGAAGTGAAGAAAACACCAACGGATAAATCTGTCTT
GCGCGTGACCTTAGCTGTTAGCCGACAATTTAAAAACGCTGATGGGCAACGGGATGCAGATTTTTTGACCATTATCATTT
GGGGCAAACCCGCAGAGCTATTTGCATCCTACGGTAAAAAAGGCAGTCTAGTTTCGATTGAGGGAGAACTCCGAACGCGT
CGTTATGAGGACAAAGCTGGTGTAACTCACTATGTGACAGAAGTCCTATGTCATCAGTTCAATCTGTTAGAAAGTCGAGC
AGCAGTTGCGCTTAGAGAGAATCAGGTTGAGACGGTGACCGATGTCATGCTAGAGGCTGAAGATTTGCCGTTTTAG
ATGTTAAATAAAAGTTTACTAATTGGTCGTTTGACCGCACAGCCGGAAGTGAAGAAAACACCAACGGATAAATCTGTCTT
GCGCGTGACCTTAGCTGTTAGCCGACAATTTAAAAACGCTGATGGGCAACGGGATGCAGATTTTTTGACCATTATCATTT
GGGGCAAACCCGCAGAGCTATTTGCATCCTACGGTAAAAAAGGCAGTCTAGTTTCGATTGAGGGAGAACTCCGAACGCGT
CGTTATGAGGACAAAGCTGGTGTAACTCACTATGTGACAGAAGTCCTATGTCATCAGTTCAATCTGTTAGAAAGTCGAGC
AGCAGTTGCGCTTAGAGAGAATCAGGTTGAGACGGTGACCGATGTCATGCTAGAGGCTGAAGATTTGCCGTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Streptococcus mutans UA159 |
62.879 |
100 |
0.634 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
60.606 |
100 |
0.611 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
56.061 |
100 |
0.565 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
56.061 |
100 |
0.565 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
55.303 |
100 |
0.557 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
55.303 |
100 |
0.557 |
| ssbB/cilA | Streptococcus mitis SK321 |
55.303 |
100 |
0.557 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
55.303 |
100 |
0.557 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
59.829 |
89.313 |
0.534 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.903 |
86.26 |
0.405 |