Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | GU337_RS01365 | Genome accession | NZ_CP047614 |
| Coordinates | 261014..261409 (+) | Length | 131 a.a. |
| NCBI ID | WP_096039919.1 | Uniprot ID | A0AAE6YLF4 |
| Organism | Lactococcus raffinolactis strain Lr_19_7 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 248673..269464 | 261014..261409 | within | 0 |
Gene organization within MGE regions
Location: 248673..269464
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GU337_RS01305 (GU337_01305) | - | 248673..250343 (+) | 1671 | WP_245325894.1 | rhamnan synthesis F family protein | - |
| GU337_RS01310 (GU337_01310) | - | 250354..251322 (+) | 969 | WP_167839659.1 | glycosyltransferase family 2 protein | - |
| GU337_RS01315 (GU337_01315) | - | 251501..253318 (+) | 1818 | WP_167839660.1 | rhamnan synthesis F family protein | - |
| GU337_RS01320 (GU337_01320) | - | 253549..254673 (+) | 1125 | WP_167839661.1 | glucosaminidase domain-containing protein | - |
| GU337_RS12455 (GU337_01325) | - | 254692..256146 (+) | 1455 | WP_167839662.1 | NlpC/P60 family protein | - |
| GU337_RS01330 (GU337_01330) | - | 256158..256685 (+) | 528 | WP_167839663.1 | hypothetical protein | - |
| GU337_RS01335 (GU337_01335) | - | 256688..257956 (+) | 1269 | WP_167839664.1 | C39 family peptidase | - |
| GU337_RS01340 (GU337_01340) | - | 257969..258331 (+) | 363 | WP_167839665.1 | hypothetical protein | - |
| GU337_RS01345 (GU337_01345) | pepA | 258443..259528 (-) | 1086 | WP_167839666.1 | glutamyl aminopeptidase | - |
| GU337_RS01350 (GU337_01350) | - | 259667..259966 (+) | 300 | WP_061773650.1 | hypothetical protein | - |
| GU337_RS01355 (GU337_01355) | - | 259979..260296 (+) | 318 | WP_061773651.1 | thioredoxin family protein | - |
| GU337_RS01360 (GU337_01360) | ytpR | 260326..260949 (+) | 624 | WP_061773652.1 | YtpR family tRNA-binding protein | - |
| GU337_RS01365 (GU337_01365) | ssbA | 261014..261409 (+) | 396 | WP_096039919.1 | single-stranded DNA-binding protein | Machinery gene |
| GU337_RS01370 (GU337_01370) | - | 261443..262975 (+) | 1533 | WP_167839667.1 | CHAP domain-containing protein | - |
| GU337_RS01375 (GU337_01375) | - | 263254..264405 (+) | 1152 | WP_167839668.1 | CHAP domain-containing protein | - |
| GU337_RS01380 (GU337_01380) | groES | 264581..264865 (+) | 285 | WP_061773656.1 | co-chaperone GroES | - |
| GU337_RS01385 (GU337_01385) | groL | 264932..266563 (+) | 1632 | WP_167839669.1 | chaperonin GroEL | - |
| GU337_RS01390 (GU337_01390) | - | 266766..267026 (+) | 261 | WP_167839670.1 | SemiSWEET family transporter | - |
| GU337_RS01395 (GU337_01395) | - | 267171..267689 (-) | 519 | WP_167839671.1 | hypothetical protein | - |
| GU337_RS01400 (GU337_01400) | - | 268172..269464 (+) | 1293 | WP_003138554.1 | adenylosuccinate synthase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14707.89 Da Isoelectric Point: 7.1673
>NTDB_id=414579 GU337_RS01365 WP_096039919.1 261014..261409(+) (ssbA) [Lactococcus raffinolactis strain Lr_19_7]
MLNKSLLIGRLTAQPEVKKTPTDKSVLRVTLAVSRQFKNADGQRDADFLTIIIWGKPAELFASYGKKGSLVSIEGELRTR
RYEDKAGVTHYVTEVLCHQFNLLESRAAVALRENQVETVTDVMLEAEDLPF
MLNKSLLIGRLTAQPEVKKTPTDKSVLRVTLAVSRQFKNADGQRDADFLTIIIWGKPAELFASYGKKGSLVSIEGELRTR
RYEDKAGVTHYVTEVLCHQFNLLESRAAVALRENQVETVTDVMLEAEDLPF
Nucleotide
Download Length: 396 bp
>NTDB_id=414579 GU337_RS01365 WP_096039919.1 261014..261409(+) (ssbA) [Lactococcus raffinolactis strain Lr_19_7]
ATGTTAAATAAAAGTTTACTAATTGGTCGTTTGACCGCACAGCCGGAAGTGAAGAAAACACCAACGGATAAATCTGTCTT
GCGCGTGACCTTAGCTGTTAGCCGACAATTTAAAAACGCTGATGGGCAACGGGATGCAGATTTTTTGACCATTATCATTT
GGGGCAAACCCGCAGAGCTATTTGCATCCTACGGTAAAAAAGGCAGTCTAGTTTCGATTGAGGGAGAACTCCGAACGCGT
CGTTATGAGGACAAAGCTGGTGTAACTCACTATGTGACAGAAGTCCTATGTCATCAGTTCAATCTGTTAGAAAGTCGAGC
AGCAGTTGCGCTTAGAGAGAATCAGGTTGAGACGGTGACCGATGTCATGCTAGAGGCTGAAGATTTGCCGTTTTAG
ATGTTAAATAAAAGTTTACTAATTGGTCGTTTGACCGCACAGCCGGAAGTGAAGAAAACACCAACGGATAAATCTGTCTT
GCGCGTGACCTTAGCTGTTAGCCGACAATTTAAAAACGCTGATGGGCAACGGGATGCAGATTTTTTGACCATTATCATTT
GGGGCAAACCCGCAGAGCTATTTGCATCCTACGGTAAAAAAGGCAGTCTAGTTTCGATTGAGGGAGAACTCCGAACGCGT
CGTTATGAGGACAAAGCTGGTGTAACTCACTATGTGACAGAAGTCCTATGTCATCAGTTCAATCTGTTAGAAAGTCGAGC
AGCAGTTGCGCTTAGAGAGAATCAGGTTGAGACGGTGACCGATGTCATGCTAGAGGCTGAAGATTTGCCGTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Streptococcus mutans UA159 |
62.879 |
100 |
0.634 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
60.606 |
100 |
0.611 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
56.061 |
100 |
0.565 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
56.061 |
100 |
0.565 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
55.303 |
100 |
0.557 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
55.303 |
100 |
0.557 |
| ssbB/cilA | Streptococcus mitis SK321 |
55.303 |
100 |
0.557 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
55.303 |
100 |
0.557 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
59.829 |
89.313 |
0.534 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.903 |
86.26 |
0.405 |