Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GTH52_RS08570 Genome accession   NZ_CP047467
Coordinates   1721326..1723155 (-) Length   609 a.a.
NCBI ID   WP_017894821.1    Uniprot ID   W6N3M0
Organism   Clostridium tyrobutyricum strain L319     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1716326..1728155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTH52_RS08555 (GTH52_08520) - 1717397..1718794 (-) 1398 WP_017750427.1 HAMP domain-containing sensor histidine kinase -
  GTH52_RS08560 (GTH52_08525) - 1718796..1719482 (-) 687 WP_017894820.1 response regulator transcription factor -
  GTH52_RS08565 (GTH52_08530) aspD 1719659..1721275 (+) 1617 WP_017750425.1 aspartate 4-decarboxylase -
  GTH52_RS08570 (GTH52_08535) rcrQ 1721326..1723155 (-) 1830 WP_017894821.1 ABC transporter ATP-binding protein Regulator
  GTH52_RS08575 (GTH52_08540) - 1723152..1725377 (-) 2226 WP_017894822.1 ABC transporter ATP-binding protein -
  GTH52_RS08580 (GTH52_08545) - 1725386..1725841 (-) 456 WP_017894823.1 MarR family transcriptional regulator -
  GTH52_RS08585 (GTH52_08550) - 1726036..1726986 (-) 951 WP_017894824.1 SPFH domain-containing protein -
  GTH52_RS08590 (GTH52_08555) - 1726999..1727430 (-) 432 WP_017894825.1 NfeD family protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 67789.80 Da        Isoelectric Point: 9.3330

>NTDB_id=413570 GTH52_RS08570 WP_017894821.1 1721326..1723155(-) (rcrQ) [Clostridium tyrobutyricum strain L319]
MSENRKSKVGSSAAVGNVGKKARNFKPTMKKLISYLSDYKLSLVIVLIFAVVSTIFSIVGPKILGHATTKLFKGVMAKIS
GTGNIDFNYIGKIILLLVVLYVISALFGYIQGWIMSGISMKVTYKFRKDISEKINRMPLGYFDRTNHGEVLSRVTNDVDT
LSQTLNQSLGQIITSVTMVIGVLIMMISISWQMTLVALCVIPVSMGLITVIVKYSQKYFKQQQDYLGHLNGHVEEMYGGH
IVMKAFNGEEKSVHKFNKMNGQLFGSAWKSQFLSGIMMPMINFVGNLGYVGICILGGWLAVKRTIEVGDIQAFIQYVRSF
TQPISQIANISNILQQTAASAERIFEFLEEEEEIPEVSNPVKLQNVNGSVEFKNVHFGYNTDKIIINDFSASIKPGQRIA
IVGPTGAGKTTIIKLLMRFYDINDGSILIDGHDIRDFTRGDLRSIFGMVLQDTWLYNGSIKENIRYGRLDATDEEVVQAA
KAAHVDGFVRTLPAGYNMILNEEASNVSQGQKQLLTIARAILANPKILILDEATSSVDTRTELKIQKAMDNLMKDRTSFI
IAHRLSTIRDADLILVMDHGDIVEQGNHEELLKKNGIYANLYNSQFEVA

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=413570 GTH52_RS08570 WP_017894821.1 1721326..1723155(-) (rcrQ) [Clostridium tyrobutyricum strain L319]
GTGAGTGAAAATAGAAAAAGTAAAGTAGGATCTTCTGCAGCTGTAGGAAATGTAGGTAAAAAAGCTCGTAATTTCAAACC
TACTATGAAAAAGCTTATTTCTTATCTAAGTGATTATAAATTATCACTTGTTATTGTATTGATATTTGCTGTTGTAAGTA
CCATATTTTCTATAGTAGGGCCTAAAATACTTGGCCATGCTACTACAAAGTTGTTTAAAGGTGTAATGGCAAAAATATCA
GGAACTGGAAATATAGATTTTAATTATATAGGAAAGATAATTTTATTACTTGTTGTGTTGTATGTAATAAGTGCATTGTT
TGGATATATTCAGGGATGGATTATGTCTGGAATATCCATGAAGGTAACCTATAAGTTTAGAAAAGATATTTCTGAGAAAA
TTAACCGTATGCCTTTAGGGTATTTTGATAGAACAAATCATGGAGAAGTTTTGTCACGTGTTACAAATGATGTAGATACT
TTAAGTCAGACCCTTAATCAAAGTTTAGGTCAAATTATCACATCAGTTACAATGGTCATAGGTGTACTTATTATGATGAT
TAGTATAAGTTGGCAGATGACACTTGTGGCACTTTGCGTAATCCCCGTATCCATGGGCCTTATAACTGTTATTGTCAAGT
ACTCTCAAAAGTATTTCAAACAGCAGCAGGATTATTTGGGACATTTAAATGGACATGTTGAGGAAATGTATGGCGGTCAT
ATTGTAATGAAGGCTTTCAATGGTGAAGAAAAAAGTGTTCATAAATTTAATAAAATGAATGGACAGTTGTTTGGTTCAGC
TTGGAAATCACAATTTTTATCAGGAATAATGATGCCTATGATAAATTTTGTAGGTAATCTTGGCTATGTAGGAATATGTA
TACTTGGAGGATGGCTTGCAGTAAAGCGAACTATTGAAGTTGGTGACATTCAGGCATTTATACAATATGTGCGTTCATTT
ACGCAGCCCATTTCACAAATAGCCAATATTTCAAACATACTTCAACAGACTGCGGCTTCAGCGGAACGTATATTTGAATT
TTTGGAAGAAGAAGAGGAAATTCCAGAAGTCAGCAATCCTGTAAAGCTTCAAAATGTAAATGGAAGTGTGGAGTTTAAAA
ATGTTCATTTTGGATATAATACAGATAAAATCATAATAAATGATTTTTCGGCATCTATTAAACCAGGACAGAGAATTGCA
ATTGTTGGACCAACTGGAGCAGGCAAGACAACTATAATTAAACTACTTATGCGTTTTTATGATATAAATGATGGATCCAT
ACTTATAGATGGTCATGATATAAGAGATTTTACTAGAGGAGATTTGCGTTCTATATTTGGAATGGTTCTTCAGGATACAT
GGCTTTATAATGGAAGCATAAAGGAAAATATAAGATATGGACGGCTTGATGCCACTGATGAGGAAGTAGTTCAAGCTGCA
AAAGCGGCACATGTGGATGGATTTGTTCGTACACTTCCTGCTGGATACAACATGATATTGAATGAAGAAGCATCCAATGT
GTCTCAAGGACAAAAACAGCTGTTAACTATTGCGAGGGCTATACTTGCAAATCCTAAAATACTTATTCTTGACGAAGCAA
CAAGTTCAGTAGATACTCGTACAGAGTTGAAAATTCAGAAAGCTATGGATAATCTTATGAAAGACAGAACAAGCTTTATA
ATAGCACATCGTTTATCTACTATTCGTGATGCTGATTTGATACTTGTTATGGATCATGGTGATATTGTTGAACAGGGAAA
TCATGAAGAACTGCTTAAGAAAAATGGAATATATGCAAATCTTTATAACAGCCAATTTGAAGTTGCTTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(43-323)

ABC transporter (ABC_tran)

(387-535)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W6N3M0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50

96.223

0.481

Multiple sequence alignment