Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GSF12_RS10385 Genome accession   NZ_CP047226
Coordinates   2274719..2275942 (-) Length   407 a.a.
NCBI ID   WP_159375395.1    Uniprot ID   A0A6P1KF27
Organism   Moraxella osloensis strain YV1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2269719..2280942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF12_RS10365 (GSF12_10365) - 2270549..2271652 (+) 1104 WP_228274245.1 bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase -
  GSF12_RS10370 (GSF12_10370) - 2271721..2273127 (+) 1407 WP_159375393.1 nicotinate phosphoribosyltransferase -
  GSF12_RS10375 (GSF12_10375) coaE 2273185..2273841 (-) 657 WP_228274246.1 dephospho-CoA kinase -
  GSF12_RS10380 (GSF12_10380) pilD 2273838..2274713 (-) 876 WP_159375394.1 prepilin peptidase Machinery gene
  GSF12_RS10385 (GSF12_10385) pilC 2274719..2275942 (-) 1224 WP_159375395.1 type II secretion system F family protein Machinery gene
  GSF12_RS10390 (GSF12_10390) pilB 2275999..2277705 (-) 1707 WP_159375396.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GSF12_RS10395 (GSF12_10395) tpiA 2278129..2278983 (+) 855 WP_159375397.1 triose-phosphate isomerase -
  GSF12_RS10400 (GSF12_10400) secG 2279075..2279395 (+) 321 WP_036594931.1 preprotein translocase subunit SecG -
  GSF12_RS10415 (GSF12_10415) rimP 2279956..2280465 (+) 510 WP_007115081.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44841.84 Da        Isoelectric Point: 9.6980

>NTDB_id=411614 GSF12_RS10385 WP_159375395.1 2274719..2275942(-) (pilC) [Moraxella osloensis strain YV1]
MAKVQTEMLLDFVYDGVNRRGEKVKGETTSRNIELAKAQLRKQGIKVKTIKKKPKPIFQMKKSIKAIDIAIFVRQLATMM
KAGVPLTQSFEIVADALDNPSMKELVLSVKSEVESGSTFAAALRKHPRYFDDLFCSLVEAGEQSGALETMLERVATYKEK
SELLKAKIKKALKYPIAVIVVAIIVTIILLVKVVPVFADLFNSFGAELPAFTQMVVNMSEWMQKWWWLLLFSIAGAVVGF
SEAKKRSKPFNDFLDRLTLKLPIFGNIAYQAVVARFSRTLSTTFAAGVPLIDALDSTAGATNNVVFYNATQKIKGDVATG
QQLQFSMRSTNLFPSMAIQMVGIGEESGSLEEMLDKVATYYENEVDNAVDGLTSLMEPMIMAILGVLVGGLVIAMYLPIF
QMGSVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=411614 GSF12_RS10385 WP_159375395.1 2274719..2275942(-) (pilC) [Moraxella osloensis strain YV1]
ATGGCAAAAGTCCAAACAGAAATGTTATTAGACTTTGTCTATGATGGGGTCAATCGCCGTGGCGAAAAAGTCAAAGGCGA
AACTACCAGCCGCAATATTGAGCTGGCAAAAGCGCAACTACGCAAGCAAGGCATCAAAGTCAAGACGATTAAGAAAAAAC
CCAAGCCTATTTTTCAAATGAAAAAAAGCATCAAGGCAATCGATATTGCTATCTTTGTGCGGCAGTTGGCTACAATGATG
AAAGCGGGCGTTCCCCTTACTCAGTCGTTTGAAATCGTTGCAGATGCGCTTGATAACCCCTCAATGAAAGAGTTGGTGCT
TAGTGTCAAATCAGAAGTGGAATCAGGTAGCACCTTTGCTGCTGCGCTGCGCAAACATCCCAGATATTTTGATGACCTGT
TTTGTTCATTGGTAGAGGCAGGTGAGCAATCAGGGGCACTTGAAACTATGCTTGAGCGTGTCGCGACGTACAAAGAAAAA
AGCGAGCTACTAAAAGCAAAAATTAAAAAAGCTTTGAAATACCCGATTGCGGTTATCGTGGTTGCGATTATCGTTACCAT
TATTTTGTTGGTCAAAGTGGTACCGGTATTTGCTGATTTATTCAATTCATTTGGCGCAGAATTACCTGCGTTTACCCAAA
TGGTGGTCAATATGTCGGAGTGGATGCAAAAATGGTGGTGGTTATTGCTATTTAGCATTGCAGGCGCTGTTGTTGGCTTT
TCTGAAGCTAAAAAACGTAGCAAGCCCTTTAATGATTTTTTAGACCGACTGACCTTAAAATTGCCAATCTTTGGCAATAT
TGCTTACCAAGCGGTGGTTGCGCGTTTTTCCCGCACTTTATCTACCACTTTTGCCGCAGGTGTGCCGCTGATTGATGCGT
TAGATTCAACCGCTGGGGCAACCAATAATGTGGTATTTTATAATGCCACGCAAAAAATCAAAGGCGATGTTGCGACGGGT
CAACAATTGCAGTTTTCGATGCGCTCTACCAATCTTTTTCCCAGTATGGCGATCCAAATGGTCGGTATTGGTGAAGAGTC
AGGTAGTCTAGAGGAGATGCTTGATAAAGTGGCGACTTATTATGAAAACGAAGTGGATAACGCCGTAGACGGGTTAACAA
GTCTGATGGAACCGATGATTATGGCTATTTTGGGGGTGCTGGTAGGGGGTCTGGTGATTGCCATGTATCTACCAATTTTC
CAAATGGGCTCGGTGGTGGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1KF27

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

70.833

100

0.71
  pilC Acinetobacter baylyi ADP1

69.363

100

0.695
  pilC Pseudomonas stutzeri DSM 10701

64.304

97.052

0.624
  pilC Legionella pneumophila strain ERS1305867

55.89

98.034

0.548
  pilG Neisseria gonorrhoeae MS11

44.697

97.297

0.435
  pilC Vibrio cholerae strain A1552

43.382

100

0.435
  pilG Neisseria meningitidis 44/76-A

44.444

97.297

0.432
  pilC Vibrio campbellii strain DS40M4

41.75

98.28

0.41

Multiple sequence alignment