Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GQR90_RS03710 Genome accession   NZ_CP047025
Coordinates   855284..856522 (-) Length   412 a.a.
NCBI ID   WP_158772934.1    Uniprot ID   -
Organism   Cobetia sp. L2A1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 850284..861522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQR90_RS03685 argJ 851005..852228 (+) 1224 WP_158772930.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  GQR90_RS03690 - 852325..853278 (+) 954 WP_158772931.1 Nudix family hydrolase -
  GQR90_RS03695 yacG 853379..853624 (-) 246 WP_158772932.1 DNA gyrase inhibitor YacG -
  GQR90_RS03700 coaE 853697..854329 (-) 633 WP_158772933.1 dephospho-CoA kinase -
  GQR90_RS03705 pilD 854326..855123 (-) 798 WP_158775288.1 A24 family peptidase Machinery gene
  GQR90_RS03710 pilC 855284..856522 (-) 1239 WP_158772934.1 type II secretion system F family protein Machinery gene
  GQR90_RS03715 pilB 856761..858497 (-) 1737 WP_158772935.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GQR90_RS03720 - 859096..859560 (+) 465 WP_158772936.1 pilin -
  GQR90_RS03725 - 859640..859942 (-) 303 WP_158772937.1 hypothetical protein -
  GQR90_RS03730 - 860005..861297 (-) 1293 WP_158772938.1 cation diffusion facilitator family transporter -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44841.32 Da        Isoelectric Point: 9.9127

>NTDB_id=409959 GQR90_RS03710 WP_158772934.1 855284..856522(-) (pilC) [Cobetia sp. L2A1]
MATIKTAKHKKKKAGIETWQWSGKNTRGENVKGELMSANVDLVKNTLVSQGIVVKRLRKKSTLFGGSKKVSGKDVTMFAR
QMATMIRAGVPVLQAFGIVAESMKSPGMRHLVEDLMNQVGAGTSFSEALRKHPQHFDNLFTNLVAAGEQAGALDKMLDRV
ATYKEKIDSLKARVKKALYYPIAVICVGIGVTAILLIKVVPQFESLFQGFGAELPAFTQLTVRLSGYAQDYWYIALGAAL
LTVFLINQGMKRSDNFAYAAHKFMLKVPVLGDILDKSSVARYSRTLATTFQAGVPLIESLDTAAGASGNKVYERAIAQIK
EDVSTGQQLNFAMRNTQLFPTLAVQMVAIGEESGSLDAMLNKVADFYEEDVDNKVDALTSLLEPFIIVVLGTIVGGLVVS
MYLPIFELGNAI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=409959 GQR90_RS03710 WP_158772934.1 855284..856522(-) (pilC) [Cobetia sp. L2A1]
ATGGCAACAATCAAAACTGCCAAGCACAAGAAAAAAAAGGCAGGCATTGAAACCTGGCAATGGTCGGGAAAAAATACCCG
TGGCGAGAACGTCAAGGGCGAATTGATGTCAGCCAATGTCGATCTCGTCAAGAATACGCTTGTCAGTCAGGGCATCGTCG
TCAAGCGCCTGCGCAAGAAGTCAACACTATTCGGGGGTAGCAAGAAGGTTAGCGGCAAGGACGTCACGATGTTCGCGCGC
CAGATGGCGACCATGATTCGTGCCGGTGTGCCGGTACTGCAAGCCTTTGGCATTGTAGCCGAGAGCATGAAAAGTCCTGG
CATGCGCCATCTGGTCGAGGACTTGATGAATCAGGTTGGCGCAGGCACCAGTTTCTCCGAGGCACTGCGCAAGCATCCGC
AACATTTTGACAATCTATTTACCAACCTGGTGGCTGCCGGTGAACAGGCAGGCGCGCTGGACAAGATGCTTGATCGCGTC
GCGACCTATAAAGAGAAGATTGATTCTCTCAAGGCTCGCGTCAAGAAGGCGCTTTATTACCCTATTGCCGTCATCTGTGT
CGGGATTGGTGTCACTGCGATTCTATTGATAAAGGTTGTTCCGCAGTTTGAAAGTCTATTTCAGGGTTTTGGTGCCGAAC
TACCCGCTTTCACCCAGTTAACGGTAAGGCTATCCGGATATGCGCAAGATTATTGGTATATCGCGCTAGGCGCTGCGTTA
CTGACGGTTTTCTTGATCAACCAAGGCATGAAACGTTCTGATAACTTCGCCTATGCCGCTCATAAATTCATGCTCAAAGT
GCCCGTATTGGGCGATATCCTGGACAAGTCTTCCGTGGCGCGCTATTCGCGAACACTGGCGACGACGTTTCAGGCAGGTG
TACCGCTGATAGAATCGCTTGATACCGCTGCTGGAGCCTCAGGCAACAAGGTCTACGAGCGCGCGATCGCCCAGATAAAG
GAAGATGTCTCTACTGGCCAGCAGCTCAACTTTGCCATGCGCAATACTCAACTGTTCCCGACATTGGCGGTGCAGATGGT
GGCGATTGGTGAGGAATCAGGTTCTCTGGATGCCATGCTCAACAAGGTAGCGGACTTCTATGAAGAAGATGTCGACAACA
AGGTCGATGCGCTGACGTCGCTACTGGAACCTTTCATCATTGTAGTGCTAGGCACAATAGTCGGTGGACTAGTGGTTTCG
ATGTACCTGCCTATCTTCGAACTCGGCAACGCAATATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(78-201)

Type II secretion system (T2SS), protein F (T2SSF)

(283-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.443

95.874

0.532
  pilC Acinetobacter baylyi ADP1

53.431

99.029

0.529
  pilC Acinetobacter baumannii D1279779

52.346

98.301

0.515
  pilC Legionella pneumophila strain ERS1305867

50.743

98.058

0.498
  pilC Vibrio campbellii strain DS40M4

44.697

96.117

0.43
  pilC Vibrio cholerae strain A1552

44.557

95.874

0.427
  pilG Neisseria gonorrhoeae MS11

40.967

95.388

0.391
  pilG Neisseria meningitidis 44/76-A

41.885

92.718

0.388

Multiple sequence alignment