Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   GQR90_RS03705 Genome accession   NZ_CP047025
Coordinates   854326..855123 (-) Length   265 a.a.
NCBI ID   WP_158775288.1    Uniprot ID   -
Organism   Cobetia sp. L2A1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 849326..860123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQR90_RS03685 argJ 851005..852228 (+) 1224 WP_158772930.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  GQR90_RS03690 - 852325..853278 (+) 954 WP_158772931.1 Nudix family hydrolase -
  GQR90_RS03695 yacG 853379..853624 (-) 246 WP_158772932.1 DNA gyrase inhibitor YacG -
  GQR90_RS03700 coaE 853697..854329 (-) 633 WP_158772933.1 dephospho-CoA kinase -
  GQR90_RS03705 pilD 854326..855123 (-) 798 WP_158775288.1 A24 family peptidase Machinery gene
  GQR90_RS03710 pilC 855284..856522 (-) 1239 WP_158772934.1 type II secretion system F family protein Machinery gene
  GQR90_RS03715 pilB 856761..858497 (-) 1737 WP_158772935.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GQR90_RS03720 - 859096..859560 (+) 465 WP_158772936.1 pilin -
  GQR90_RS03725 - 859640..859942 (-) 303 WP_158772937.1 hypothetical protein -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 29235.05 Da        Isoelectric Point: 8.0113

>NTDB_id=409958 GQR90_RS03705 WP_158775288.1 854326..855123(-) (pilD) [Cobetia sp. L2A1]
MVGSFLNVVITRLPVMMMRQWRDEAREALELETEENPRFNLLVPASRCPGCDTPIHWHDNIPVLGWLKRRGRCASCNTRI
SPQYPLVELAGGALAVAITLIYGLDMQSLWIFGACLTLLVLSVIDFRTQLLPDAITLPLLWAGLAYQLMFQPLMLSSAVV
GAMAGYLVLWSFYWLFKLITGKEGMGYGDFKLLGALGAWLGWQWLPLLLILSAGLGAVLGILLQLMVPRLRGAPMPFGPY
LAVAGWIALLFGTPLMSLYLSVIGA

Nucleotide


Download         Length: 798 bp        

>NTDB_id=409958 GQR90_RS03705 WP_158775288.1 854326..855123(-) (pilD) [Cobetia sp. L2A1]
ATGGTCGGCAGCTTTCTGAATGTCGTGATCACACGCTTACCGGTCATGATGATGCGCCAATGGCGCGACGAAGCCCGCGA
GGCGCTGGAACTCGAGACAGAGGAGAATCCGCGCTTCAATTTACTGGTACCGGCCTCACGCTGCCCCGGCTGTGATACGC
CCATTCATTGGCATGACAATATCCCGGTGTTGGGCTGGTTGAAGCGCCGTGGCCGCTGCGCGAGTTGCAACACACGCATC
AGTCCGCAATACCCGCTGGTAGAGCTTGCCGGTGGCGCCCTGGCGGTGGCCATCACCCTCATCTATGGCCTCGACATGCA
GAGCCTGTGGATCTTCGGTGCCTGCCTGACATTGCTTGTCCTGTCAGTCATTGATTTTCGTACCCAGCTGCTGCCCGATG
CCATCACGCTGCCGCTGTTGTGGGCTGGCCTTGCCTATCAGTTGATGTTCCAGCCGTTGATGCTCTCCAGTGCTGTTGTC
GGTGCCATGGCCGGCTATCTGGTGCTGTGGAGCTTCTACTGGCTGTTCAAGTTGATTACCGGCAAGGAAGGCATGGGGTA
CGGTGACTTCAAGCTACTTGGTGCGCTCGGTGCCTGGCTGGGCTGGCAGTGGCTACCGCTGCTGTTGATTCTGTCAGCCG
GCCTTGGCGCAGTTCTCGGCATTCTGCTGCAACTGATGGTACCCCGCCTGCGTGGTGCGCCGATGCCCTTCGGGCCATAT
CTCGCCGTTGCCGGTTGGATCGCCCTACTGTTCGGCACGCCGTTGATGAGTCTCTACCTCAGTGTCATCGGCGCATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(1-100)

Type IV leader peptidase family (Peptidase_A24)

(115-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

50.562

100

0.509
  pilD Acinetobacter baumannii D1279779

47.909

99.245

0.475
  pilD Acinetobacter nosocomialis M2

47.148

99.245

0.468
  pilD Vibrio campbellii strain DS40M4

46.241

100

0.464
  pilD Neisseria gonorrhoeae MS11

47.39

93.962

0.445

Multiple sequence alignment