Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GQR89_RS16245 Genome accession   NZ_CP047024
Coordinates   3825938..3827143 (-) Length   401 a.a.
NCBI ID   WP_158771009.1    Uniprot ID   -
Organism   Paraglaciecola sp. L1A13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3820938..3832143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQR89_RS16215 - 3821107..3822129 (-) 1023 WP_158771003.1 carboxylesterase -
  GQR89_RS16220 - 3822282..3823025 (-) 744 WP_158771004.1 glutathione peroxidase -
  GQR89_RS16225 yacG 3823184..3823414 (-) 231 WP_158771005.1 DNA gyrase inhibitor YacG -
  GQR89_RS16230 zapD 3823443..3824195 (-) 753 WP_158771006.1 cell division protein ZapD -
  GQR89_RS16235 coaE 3824339..3824947 (-) 609 WP_158771007.1 dephospho-CoA kinase -
  GQR89_RS16240 pilD 3824957..3825832 (-) 876 WP_158771008.1 A24 family peptidase Machinery gene
  GQR89_RS16245 pilC 3825938..3827143 (-) 1206 WP_158771009.1 type II secretion system F family protein Machinery gene
  GQR89_RS16250 - 3827212..3827658 (-) 447 WP_158771010.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  GQR89_RS16255 nadC 3827868..3828710 (-) 843 WP_158771011.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GQR89_RS16260 - 3828759..3829295 (-) 537 WP_233268995.1 TIGR02281 family clan AA aspartic protease -
  GQR89_RS16265 ampD 3829363..3829959 (+) 597 WP_158771012.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  GQR89_RS16270 ampE 3829988..3830800 (+) 813 WP_158771013.1 beta-lactamase regulator AmpE -
  GQR89_RS16275 - 3831017..3831772 (+) 756 WP_158771014.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 401 a.a.        Molecular weight: 43017.79 Da        Isoelectric Point: 9.9374

>NTDB_id=409950 GQR89_RS16245 WP_158771009.1 3825938..3827143(-) (pilC) [Paraglaciecola sp. L1A13]
MPKATTTFVWSGANRKGQTVKGEISAVSVLEAKNLLRRQGVSAKKVKKLPKPLFGGQKIKAVDISIISRQIATMLSAGVT
LIQTIDMIAGGHNNPNIRKMLGEIGNEVKAGNPLSVALRKHPDQFDDLYCDLVATGEQSGALETIYERIATYKEKAEALK
SKIKKAMFYPVAVIVVAFIVTTILLIFVVPQFEEIFSSFGAELPAFTQFVLGISRFFQDYGLFLAAGLVVASIVFSKSYK
KSKRLRDSLDAKLLKIPVIGLILKKAAVARFSRTLATTFAAGVPLIGALDSAAGASGNAVFRDAILFVKKEVAGGTQMNT
AMRATAVFPDMVTQMVAIGEEAGAVDDMLSKIATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIGGLIVAMYLPIFEMGNV
V

Nucleotide


Download         Length: 1206 bp        

>NTDB_id=409950 GQR89_RS16245 WP_158771009.1 3825938..3827143(-) (pilC) [Paraglaciecola sp. L1A13]
ATGCCAAAAGCCACCACTACCTTTGTATGGAGCGGAGCAAATCGTAAAGGTCAAACCGTTAAAGGGGAGATCAGTGCGGT
ATCGGTATTAGAGGCCAAAAACCTGTTACGTCGTCAGGGCGTATCGGCTAAGAAAGTTAAAAAACTCCCTAAACCGTTAT
TCGGTGGACAAAAAATAAAAGCGGTTGATATCAGTATTATCTCCCGCCAAATTGCCACTATGCTCAGTGCTGGCGTCACG
CTAATCCAAACTATAGATATGATCGCCGGCGGACATAACAATCCTAATATTCGTAAAATGTTGGGTGAAATTGGCAATGA
AGTCAAAGCGGGCAATCCGCTGTCGGTGGCGCTGCGCAAGCATCCTGATCAATTTGATGACCTGTATTGTGATTTGGTGG
CGACCGGAGAGCAATCCGGTGCACTTGAAACCATTTACGAGCGCATTGCTACTTACAAAGAAAAAGCGGAAGCCCTGAAA
TCGAAAATTAAAAAAGCCATGTTTTATCCCGTGGCGGTCATCGTGGTCGCTTTTATTGTGACGACAATATTGTTAATTTT
CGTAGTACCACAGTTTGAAGAAATTTTTAGTAGTTTTGGCGCTGAGTTACCCGCCTTTACTCAGTTTGTGTTGGGTATTT
CTCGTTTTTTTCAAGACTATGGTTTGTTTCTTGCCGCTGGCCTAGTTGTAGCCAGCATTGTCTTTAGCAAGAGTTATAAA
AAATCAAAACGTTTAAGAGATAGCCTCGATGCGAAGCTACTTAAAATTCCTGTTATCGGTTTGATCTTAAAAAAAGCTGC
GGTGGCGAGATTTAGTCGTACTTTAGCGACGACCTTTGCAGCCGGTGTTCCGCTGATCGGGGCATTAGATTCTGCTGCGG
GTGCCTCAGGTAATGCAGTCTTTCGCGACGCAATTTTATTCGTTAAGAAAGAGGTCGCTGGTGGTACGCAAATGAATACG
GCGATGAGGGCAACGGCCGTGTTTCCCGATATGGTGACGCAAATGGTGGCCATTGGGGAAGAAGCTGGTGCGGTTGATGA
TATGCTCAGTAAGATTGCCACTATTTACGAGGCAGAAGTGGATGATATGGTCGATGGGCTGACTAGTTTACTCGAGCCGA
TGATCATGGCTGTACTCGGTGTGGTTATTGGTGGCTTAATCGTGGCAATGTATTTGCCTATTTTTGAAATGGGCAATGTT
GTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-190)

Type II secretion system (T2SS), protein F (T2SSF)

(271-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.286

99.252

0.569
  pilC Acinetobacter baylyi ADP1

51.889

99.002

0.514
  pilC Acinetobacter baumannii D1279779

51.508

99.252

0.511
  pilC Legionella pneumophila strain ERS1305867

50.125

99.501

0.499
  pilC Vibrio cholerae strain A1552

45.32

100

0.459
  pilC Vibrio campbellii strain DS40M4

43.86

99.501

0.436
  pilG Neisseria meningitidis 44/76-A

43.25

99.751

0.431
  pilG Neisseria gonorrhoeae MS11

43

99.751

0.429
  pilC Thermus thermophilus HB27

38.191

99.252

0.379

Multiple sequence alignment