Detailed information NTG0409949

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GQR89_RS16240
• Genome accession: NZ_CP047024
• Coordinates: 3824957..3825832 (-)
• Length: 291 a.a.
• NCBI ID: WP_158771008.1
• Uniprot ID: -
• Organism: Paraglaciecola sp. L1A13
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3819957..3830832

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GQR89_RS16215	-	3821107..3822129 (-)	1023	WP_158771003.1	carboxylesterase	-
GQR89_RS16220	-	3822282..3823025 (-)	744	WP_158771004.1	glutathione peroxidase	-
GQR89_RS16225	yacG	3823184..3823414 (-)	231	WP_158771005.1	DNA gyrase inhibitor YacG	-
GQR89_RS16230	zapD	3823443..3824195 (-)	753	WP_158771006.1	cell division protein ZapD	-
GQR89_RS16235	coaE	3824339..3824947 (-)	609	WP_158771007.1	dephospho-CoA kinase	-
GQR89_RS16240	pilD	3824957..3825832 (-)	876	WP_158771008.1	A24 family peptidase	Machinery gene
GQR89_RS16245	pilC	3825938..3827143 (-)	1206	WP_158771009.1	type II secretion system F family protein	Machinery gene
GQR89_RS16250	-	3827212..3827658 (-)	447	WP_158771010.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
GQR89_RS16255	nadC	3827868..3828710 (-)	843	WP_158771011.1	carboxylating nicotinate-nucleotide diphosphorylase	-
GQR89_RS16260	-	3828759..3829295 (-)	537	WP_233268995.1	TIGR02281 family clan AA aspartic protease	-
GQR89_RS16265	ampD	3829363..3829959 (+)	597	WP_158771012.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
GQR89_RS16270	ampE	3829988..3830800 (+)	813	WP_158771013.1	beta-lactamase regulator AmpE	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32796.78 Da
• Isoelectric Point: 6.9287

>NTDB_id=409949 GQR89_RS16240 WP_158771008.1 3824957..3825832(-) (pilD) [Paraglaciecola sp. L1A13]
MHATLQLMADSPAFFLSFVFIVSLMIGSFLNVVIYRLPVMMERSWEADFQAHFNPDEQITQTSPFNLVKPDSTCPKCQHK
IRAWENIPVISWLLLRGKCSQCHNRISIRYPLVELFTAFCSVWIAWHYGYSTSALAGIFLTWLLIALIFIDIDTMLLPDQ
LTLPLLWMGLLFSVVNPSVTSADSIIGASAGYLSLWSVYWVFKLLTGKEGMGYGDFKLLAALGAWIGWQYLPIVILLSSL
VGAIIGICILTLQGKDKGQAIPFGPYLAIAGWLTLLYGDWIAAQYWQWVRL

Nucleotide

• Length: 876 bp

>NTDB_id=409949 GQR89_RS16240 WP_158771008.1 3824957..3825832(-) (pilD) [Paraglaciecola sp. L1A13]
ATGCACGCAACTCTTCAGCTGATGGCTGACTCCCCAGCATTTTTTCTCAGTTTCGTTTTTATCGTCAGTCTAATGATCGG
TAGTTTCCTTAATGTGGTTATCTACCGCTTACCTGTCATGATGGAACGCAGTTGGGAGGCTGATTTTCAAGCTCATTTCA
ACCCTGATGAACAAATTACCCAAACGAGCCCATTCAATTTAGTCAAACCCGATTCTACCTGTCCCAAATGCCAGCATAAA
ATTCGTGCGTGGGAAAACATTCCCGTTATAAGCTGGTTGCTACTGCGCGGGAAATGCAGCCAGTGTCATAATCGTATTTC
TATTCGTTATCCCTTAGTCGAGCTTTTTACTGCGTTTTGTTCAGTTTGGATTGCTTGGCATTATGGTTATTCGACATCAG
CATTAGCTGGGATATTCCTAACTTGGTTATTGATAGCCCTAATTTTTATCGACATTGATACTATGTTATTACCGGACCAA
TTAACGCTGCCACTACTATGGATGGGGTTATTATTCAGTGTTGTTAATCCATCCGTTACCAGCGCCGACTCAATTATAGG
GGCGTCGGCAGGATACTTGAGTTTGTGGTCGGTCTATTGGGTATTTAAACTATTAACCGGTAAAGAGGGAATGGGTTATG
GCGATTTTAAATTACTTGCCGCGCTTGGAGCGTGGATAGGCTGGCAATATTTACCGATTGTGATCCTGCTGTCTTCACTA
GTAGGCGCGATAATCGGCATCTGTATTTTAACTTTGCAAGGTAAAGATAAAGGGCAGGCGATACCGTTTGGTCCCTATTT
AGCCATTGCAGGCTGGTTGACGTTGTTATACGGAGATTGGATTGCGGCACAATATTGGCAGTGGGTGAGATTATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	57.609	94.845	0.546
pilD	Vibrio cholerae strain A1552	57.04	95.189	0.543
pilD	Acinetobacter baumannii D1279779	54.682	91.753	0.502
pilD	Acinetobacter nosocomialis M2	53.933	91.753	0.495
pilD	Neisseria gonorrhoeae MS11	49.818	94.502	0.471