Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GQR87_RS15980 Genome accession   NZ_CP047023
Coordinates   3844115..3845329 (-) Length   404 a.a.
NCBI ID   WP_158971032.1    Uniprot ID   -
Organism   Paraglaciecola sp. L3A3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3839115..3850329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQR87_RS15950 - 3839358..3840380 (-) 1023 WP_158971020.1 carboxylesterase -
  GQR87_RS15955 - 3840521..3841261 (-) 741 WP_158971022.1 glutathione peroxidase -
  GQR87_RS15960 yacG 3841380..3841610 (-) 231 WP_158971024.1 DNA gyrase inhibitor YacG -
  GQR87_RS15965 zapD 3841620..3842372 (-) 753 WP_158971026.1 cell division protein ZapD -
  GQR87_RS15970 coaE 3842474..3843079 (-) 606 WP_158971028.1 dephospho-CoA kinase -
  GQR87_RS15975 pilD 3843090..3843983 (-) 894 WP_158971030.1 A24 family peptidase Machinery gene
  GQR87_RS15980 pilC 3844115..3845329 (-) 1215 WP_158971032.1 type II secretion system F family protein Machinery gene
  GQR87_RS15985 - 3845408..3845848 (-) 441 WP_158971034.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  GQR87_RS15990 nadC 3846050..3846892 (-) 843 WP_158971036.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GQR87_RS15995 - 3846945..3847448 (-) 504 WP_158971038.1 TIGR02281 family clan AA aspartic protease -
  GQR87_RS16000 - 3847463..3848458 (-) 996 WP_158971040.1 cytochrome-c peroxidase -
  GQR87_RS16005 ampD 3848592..3849131 (+) 540 WP_158971042.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  GQR87_RS16010 ampE 3849198..3850022 (+) 825 WP_158971044.1 beta-lactamase regulator AmpE -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 43454.18 Da        Isoelectric Point: 9.5856

>NTDB_id=409926 GQR87_RS15980 WP_158971032.1 3844115..3845329(-) (pilC) [Paraglaciecola sp. L3A3]
MAATTPTTYTYQGSNKRGQAVKGEISAMSVLEAKNQLRRQGISAKRVKKLAKPLFGKGGEKIKPADIAVLSRQMATMLSA
GVTLIQTIDMIAGGHSNVNMRKLLGEIGSEVKAGNPLSTTLRKHSDYFDDLYCDLVETGEQSGALETIYDRIALYKEKAE
ALKSKIKKAMFYPIAVIVVAFIVTTILLIFVVPQFEEIFASFGAELPAFTQFVLSISRFMQDYGLFVGAGLFIGGTLFAR
AHKKSIKLRDSVDKKILKIPVIGEILKKASVARFTRTLSTTFAAGVPLIGALDSAAGAAGNAVFRDAILFVKKEVAGGVQ
MNVAMRSTGTFPEMVVQMIAIGEEAGAVDEMLSKIATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIGGLIVAMYLPIFEM
GNVI

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=409926 GQR87_RS15980 WP_158971032.1 3844115..3845329(-) (pilC) [Paraglaciecola sp. L3A3]
ATGGCTGCGACTACTCCCACAACCTATACCTACCAAGGCTCCAATAAACGGGGGCAGGCGGTAAAAGGTGAAATTTCTGC
TATGTCAGTGCTGGAAGCTAAAAACCAGCTTAGACGGCAGGGGATTTCTGCTAAAAGAGTGAAAAAGTTAGCTAAACCTT
TGTTTGGTAAAGGTGGTGAAAAAATTAAACCAGCAGATATTGCTGTGTTATCTCGGCAAATGGCCACTATGTTAAGCGCT
GGTGTTACTTTAATTCAAACCATAGATATGATTGCCGGTGGCCATTCTAATGTGAATATGCGTAAGCTATTAGGCGAGAT
TGGTTCTGAAGTCAAAGCAGGTAATCCACTTTCTACTACTCTTCGTAAACACTCAGATTATTTCGATGATTTATATTGTG
ACTTAGTCGAAACGGGGGAGCAATCAGGTGCCCTCGAAACTATATATGATCGTATTGCCTTATATAAAGAAAAAGCCGAA
GCCCTTAAATCAAAAATTAAAAAAGCCATGTTTTACCCCATAGCGGTCATCGTTGTGGCGTTTATTGTGACCACTATTCT
GTTAATTTTTGTGGTTCCTCAATTTGAAGAAATTTTTGCCAGTTTTGGCGCAGAGTTACCAGCCTTTACCCAATTTGTTT
TATCTATCTCTCGATTTATGCAGGATTACGGTTTGTTTGTTGGGGCAGGGTTGTTTATCGGAGGCACTTTATTTGCACGA
GCCCATAAAAAGTCTATTAAGTTACGGGATTCGGTAGATAAAAAAATATTAAAAATACCGGTTATTGGGGAAATATTAAA
AAAAGCATCAGTGGCACGTTTTACTCGTACTTTATCAACAACTTTTGCTGCAGGTGTACCCTTAATTGGCGCGCTAGACT
CAGCTGCGGGAGCAGCAGGTAATGCAGTATTTAGAGATGCTATTTTATTTGTGAAAAAAGAAGTAGCAGGTGGAGTGCAA
ATGAATGTCGCGATGCGCTCTACTGGGACTTTTCCCGAGATGGTGGTGCAAATGATCGCCATAGGAGAAGAAGCTGGAGC
AGTAGATGAGATGTTAAGTAAAATTGCCACCATATACGAAGCTGAAGTGGATGACATGGTTGATGGTTTAACCAGTTTGT
TAGAACCCATGATTATGGCTGTATTAGGTGTAGTGATTGGTGGTTTGATTGTGGCTATGTATTTACCCATATTTGAAATG
GGTAATGTTATTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)

Type II secretion system (T2SS), protein F (T2SSF)

(71-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.799

98.515

0.589
  pilC Acinetobacter baylyi ADP1

51.122

99.257

0.507
  pilC Legionella pneumophila strain ERS1305867

50.877

98.762

0.502
  pilC Acinetobacter baumannii D1279779

50.251

98.515

0.495
  pilC Vibrio cholerae strain A1552

44.332

98.267

0.436
  pilG Neisseria meningitidis 44/76-A

43.669

95.792

0.418
  pilG Neisseria gonorrhoeae MS11

43.411

95.792

0.416
  pilC Vibrio campbellii strain DS40M4

41.75

99.01

0.413
  pilC Thermus thermophilus HB27

36.567

99.505

0.364

Multiple sequence alignment