Detailed information NTG0409925

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GQR87_RS15975
• Genome accession: NZ_CP047023
• Coordinates: 3843090..3843983 (-)
• Length: 297 a.a.
• NCBI ID: WP_158971030.1
• Uniprot ID: -
• Organism: Paraglaciecola sp. L3A3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3838090..3848983

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GQR87_RS15940	-	3838380..3838772 (-)	393	WP_158971016.1	CidA/LrgA family protein	-
GQR87_RS15945	-	3838834..3839361 (-)	528	WP_158971018.1	DUF1697 domain-containing protein	-
GQR87_RS15950	-	3839358..3840380 (-)	1023	WP_158971020.1	carboxylesterase	-
GQR87_RS15955	-	3840521..3841261 (-)	741	WP_158971022.1	glutathione peroxidase	-
GQR87_RS15960	yacG	3841380..3841610 (-)	231	WP_158971024.1	DNA gyrase inhibitor YacG	-
GQR87_RS15965	zapD	3841620..3842372 (-)	753	WP_158971026.1	cell division protein ZapD	-
GQR87_RS15970	coaE	3842474..3843079 (-)	606	WP_158971028.1	dephospho-CoA kinase	-
GQR87_RS15975	pilD	3843090..3843983 (-)	894	WP_158971030.1	A24 family peptidase	Machinery gene
GQR87_RS15980	pilC	3844115..3845329 (-)	1215	WP_158971032.1	type II secretion system F family protein	Machinery gene
GQR87_RS15985	-	3845408..3845848 (-)	441	WP_158971034.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
GQR87_RS15990	nadC	3846050..3846892 (-)	843	WP_158971036.1	carboxylating nicotinate-nucleotide diphosphorylase	-
GQR87_RS15995	-	3846945..3847448 (-)	504	WP_158971038.1	TIGR02281 family clan AA aspartic protease	-
GQR87_RS16000	-	3847463..3848458 (-)	996	WP_158971040.1	cytochrome-c peroxidase	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 33118.20 Da
• Isoelectric Point: 5.2120

>NTDB_id=409925 GQR87_RS15975 WP_158971030.1 3843090..3843983(-) (pilD) [Paraglaciecola sp. L3A3]
MSEMLQLMADSPTFFIGFVFVLSLLVGSFLNVVIYRLPVMMERAWQSECDQYLAQKNSTQLAEPTSNDQVFNLVKPDSTC
PKCQHKIRAWENIPVISWLFLKGKCSQCKNPISIRYPMVELATGLLSALAAWHFGFGLAGFAAVLATWLLIAMTFIDLDT
MLLPDQLTLSLLWIGLLISIESPFVSTQDAIIGAALGYLCLWSIYWAFKLITGKEGMGYGDFKLLAALGAWVGWQHLAVV
ILLSSFVGAIIGISLLSLQGKDKSQPIPFGPYLAIAGWLTLLYGDWFVDLYWQWLLL

Nucleotide

• Length: 894 bp

>NTDB_id=409925 GQR87_RS15975 WP_158971030.1 3843090..3843983(-) (pilD) [Paraglaciecola sp. L3A3]
ATGTCCGAAATGTTGCAATTAATGGCTGATTCTCCCACCTTTTTTATCGGTTTTGTGTTTGTCTTAAGTCTACTTGTGGG
GAGTTTCCTTAACGTCGTGATTTATCGCTTACCTGTGATGATGGAACGAGCATGGCAAAGTGAGTGTGATCAATATTTAG
CACAAAAAAATTCAACTCAGCTTGCTGAGCCTACTAGCAATGATCAAGTCTTCAATTTAGTTAAACCTGATTCAACATGT
CCTAAGTGCCAACACAAAATTAGAGCATGGGAAAATATTCCTGTGATTAGCTGGTTGTTTTTAAAAGGTAAGTGCAGCCA
ATGTAAAAATCCAATCTCTATTCGTTATCCTATGGTGGAGTTAGCAACGGGATTATTATCCGCTCTAGCTGCTTGGCATT
TTGGTTTTGGTTTAGCTGGATTTGCCGCTGTCTTGGCCACTTGGTTGCTAATAGCGATGACTTTTATTGACTTAGATACT
ATGTTGTTACCGGATCAATTAACCTTGTCTTTATTATGGATAGGTCTATTAATTAGTATCGAAAGCCCCTTTGTTTCTAC
TCAAGATGCAATTATTGGTGCCGCTTTGGGTTATCTCTGTTTGTGGAGTATATATTGGGCCTTTAAATTAATAACCGGTA
AAGAAGGCATGGGCTACGGGGACTTTAAGTTATTAGCTGCTTTAGGTGCTTGGGTGGGCTGGCAGCATTTAGCTGTGGTG
ATTTTATTATCTTCTTTTGTGGGGGCTATTATCGGTATAAGTTTATTGTCGTTGCAAGGCAAAGACAAAAGCCAACCGAT
TCCTTTTGGTCCCTATTTGGCTATAGCGGGTTGGTTAACTTTATTATATGGCGACTGGTTTGTTGATCTCTATTGGCAAT
GGTTATTACTTTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (145-253)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.017	97.306	0.535
pilD	Vibrio campbellii strain DS40M4	53.061	98.99	0.525
pilD	Acinetobacter baumannii D1279779	52.747	91.919	0.485
pilD	Acinetobacter nosocomialis M2	52.015	91.919	0.478
pilD	Neisseria gonorrhoeae MS11	46.809	94.949	0.444