Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | GO485_RS21260 | Genome accession | NZ_CP046904 |
| Coordinates | 4937343..4938572 (-) | Length | 409 a.a. |
| NCBI ID | WP_145872723.1 | Uniprot ID | A0A562Q3G0 |
| Organism | Pseudoduganella flava strain DSM 26639 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4932343..4943572
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GO485_RS21245 (GO485_21200) | - | 4933444..4934925 (+) | 1482 | WP_145872720.1 | M81 family metallopeptidase | - |
| GO485_RS21250 (GO485_21205) | - | 4934918..4936231 (+) | 1314 | WP_145872721.1 | peptide MFS transporter | - |
| GO485_RS21255 (GO485_21210) | astA | 4936233..4937264 (+) | 1032 | WP_145872722.1 | arginine N-succinyltransferase | - |
| GO485_RS21260 (GO485_21215) | pilC | 4937343..4938572 (-) | 1230 | WP_145872723.1 | type II secretion system F family protein | Machinery gene |
| GO485_RS21265 (GO485_21220) | pilB | 4938581..4940266 (-) | 1686 | WP_229418555.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GO485_RS21270 (GO485_21225) | - | 4940363..4941649 (-) | 1287 | WP_145872725.1 | HlyC/CorC family transporter | - |
| GO485_RS21275 (GO485_21230) | - | 4941857..4942711 (+) | 855 | WP_145872726.1 | helix-turn-helix domain-containing protein | - |
| GO485_RS21280 (GO485_21235) | - | 4942781..4943272 (+) | 492 | WP_145872727.1 | NADH-quinone oxidoreductase subunit B family protein | - |
Sequence
Protein
Download Length: 409 a.a. Molecular weight: 44765.76 Da Isoelectric Point: 9.8733
>NTDB_id=409263 GO485_RS21260 WP_145872723.1 4937343..4938572(-) (pilC) [Pseudoduganella flava strain DSM 26639]
MAHAANRSRDGQIKESVFAWEGKDKTGKTVRGELRAGGEAVVNVTLRRQGIMVTKVKKKVYRSGKKVTEKDITLFTRQLA
TMMKAGVPLLQAFDIVGKGHSNPSVSKLIMDLRADIETGTSLNQAFRKFPLYFDPLFCNLVGAGEQAGILEDLLTRLAVY
KEKTLAMKAKIKSALTYPIAILAVAFIVTAVIMIWVVPAFKEVFTSFGADLPAPTLLVMAMSEFFVNWWYLIFGGLFAAI
YFFFQAWRRSLNMQRTMDRLLLKLPVFGEVIRKATIARWTRTLATMFAAGVPLVEALDSVGGASGNAVYLDATRRIQTEV
STGTSLTVAMQNAEVFPNMVTQMVAIGEESGALDGMLGKVADFYEEEVDEAVASLSSLMEPAIMVILGVLIGGLVVAMYL
PIFKLGSVV
MAHAANRSRDGQIKESVFAWEGKDKTGKTVRGELRAGGEAVVNVTLRRQGIMVTKVKKKVYRSGKKVTEKDITLFTRQLA
TMMKAGVPLLQAFDIVGKGHSNPSVSKLIMDLRADIETGTSLNQAFRKFPLYFDPLFCNLVGAGEQAGILEDLLTRLAVY
KEKTLAMKAKIKSALTYPIAILAVAFIVTAVIMIWVVPAFKEVFTSFGADLPAPTLLVMAMSEFFVNWWYLIFGGLFAAI
YFFFQAWRRSLNMQRTMDRLLLKLPVFGEVIRKATIARWTRTLATMFAAGVPLVEALDSVGGASGNAVYLDATRRIQTEV
STGTSLTVAMQNAEVFPNMVTQMVAIGEESGALDGMLGKVADFYEEEVDEAVASLSSLMEPAIMVILGVLIGGLVVAMYL
PIFKLGSVV
Nucleotide
Download Length: 1230 bp
>NTDB_id=409263 GO485_RS21260 WP_145872723.1 4937343..4938572(-) (pilC) [Pseudoduganella flava strain DSM 26639]
ATGGCACACGCGGCGAACCGGTCCAGGGACGGTCAGATCAAGGAATCCGTCTTCGCCTGGGAAGGCAAGGACAAGACGGG
CAAGACCGTGCGCGGCGAGCTGCGCGCGGGCGGCGAGGCCGTCGTCAACGTGACGCTGCGGCGCCAGGGCATCATGGTCA
CCAAGGTGAAGAAGAAGGTGTACCGCTCCGGCAAGAAGGTCACGGAAAAGGACATCACGCTGTTCACCCGCCAGCTGGCC
ACGATGATGAAGGCCGGCGTGCCGCTGCTGCAGGCGTTCGACATCGTCGGCAAGGGCCACTCGAATCCTTCCGTGTCGAA
GCTGATCATGGACCTGCGCGCGGACATCGAGACGGGCACGAGCCTGAACCAGGCGTTCCGCAAGTTCCCGCTGTACTTCG
ACCCGCTGTTCTGCAACCTCGTCGGCGCCGGCGAACAGGCCGGCATCCTGGAAGACCTGCTGACGCGCCTTGCCGTCTAC
AAGGAAAAGACGCTGGCGATGAAGGCCAAGATCAAGTCGGCGCTGACGTACCCGATCGCGATCCTGGCCGTCGCGTTCAT
CGTCACGGCCGTCATCATGATCTGGGTGGTGCCCGCGTTCAAGGAAGTATTCACGAGCTTCGGCGCGGACCTGCCGGCGC
CGACGCTGCTGGTGATGGCGATGTCGGAGTTCTTCGTCAACTGGTGGTACCTGATCTTCGGCGGGCTGTTTGCCGCCATC
TACTTCTTCTTCCAGGCCTGGCGGCGCTCGCTGAACATGCAGCGCACGATGGACCGGCTGCTGCTGAAATTGCCCGTGTT
CGGCGAGGTGATCCGCAAGGCGACGATCGCCCGCTGGACCCGCACGCTGGCGACGATGTTCGCCGCCGGCGTGCCGCTGG
TGGAAGCGCTGGACTCGGTTGGCGGTGCGTCGGGCAACGCCGTGTACCTGGACGCCACCCGCCGCATCCAGACGGAAGTC
TCCACCGGCACGAGCCTGACGGTGGCGATGCAGAACGCCGAGGTGTTCCCCAACATGGTCACGCAGATGGTCGCGATCGG
TGAGGAATCCGGCGCGCTGGACGGCATGCTGGGCAAGGTGGCCGACTTCTACGAAGAGGAAGTCGACGAGGCCGTCGCGT
CGCTGTCGTCGCTGATGGAACCGGCGATCATGGTGATCCTCGGCGTGCTGATCGGCGGCCTCGTCGTCGCGATGTACCTG
CCGATCTTCAAGCTGGGCTCCGTCGTCTGA
ATGGCACACGCGGCGAACCGGTCCAGGGACGGTCAGATCAAGGAATCCGTCTTCGCCTGGGAAGGCAAGGACAAGACGGG
CAAGACCGTGCGCGGCGAGCTGCGCGCGGGCGGCGAGGCCGTCGTCAACGTGACGCTGCGGCGCCAGGGCATCATGGTCA
CCAAGGTGAAGAAGAAGGTGTACCGCTCCGGCAAGAAGGTCACGGAAAAGGACATCACGCTGTTCACCCGCCAGCTGGCC
ACGATGATGAAGGCCGGCGTGCCGCTGCTGCAGGCGTTCGACATCGTCGGCAAGGGCCACTCGAATCCTTCCGTGTCGAA
GCTGATCATGGACCTGCGCGCGGACATCGAGACGGGCACGAGCCTGAACCAGGCGTTCCGCAAGTTCCCGCTGTACTTCG
ACCCGCTGTTCTGCAACCTCGTCGGCGCCGGCGAACAGGCCGGCATCCTGGAAGACCTGCTGACGCGCCTTGCCGTCTAC
AAGGAAAAGACGCTGGCGATGAAGGCCAAGATCAAGTCGGCGCTGACGTACCCGATCGCGATCCTGGCCGTCGCGTTCAT
CGTCACGGCCGTCATCATGATCTGGGTGGTGCCCGCGTTCAAGGAAGTATTCACGAGCTTCGGCGCGGACCTGCCGGCGC
CGACGCTGCTGGTGATGGCGATGTCGGAGTTCTTCGTCAACTGGTGGTACCTGATCTTCGGCGGGCTGTTTGCCGCCATC
TACTTCTTCTTCCAGGCCTGGCGGCGCTCGCTGAACATGCAGCGCACGATGGACCGGCTGCTGCTGAAATTGCCCGTGTT
CGGCGAGGTGATCCGCAAGGCGACGATCGCCCGCTGGACCCGCACGCTGGCGACGATGTTCGCCGCCGGCGTGCCGCTGG
TGGAAGCGCTGGACTCGGTTGGCGGTGCGTCGGGCAACGCCGTGTACCTGGACGCCACCCGCCGCATCCAGACGGAAGTC
TCCACCGGCACGAGCCTGACGGTGGCGATGCAGAACGCCGAGGTGTTCCCCAACATGGTCACGCAGATGGTCGCGATCGG
TGAGGAATCCGGCGCGCTGGACGGCATGCTGGGCAAGGTGGCCGACTTCTACGAAGAGGAAGTCGACGAGGCCGTCGCGT
CGCTGTCGTCGCTGATGGAACCGGCGATCATGGTGATCCTCGGCGTGCTGATCGGCGGCCTCGTCGTCGCGATGTACCTG
CCGATCTTCAAGCTGGGCTCCGTCGTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
56.566 |
96.822 |
0.548 |
| pilC | Pseudomonas stutzeri DSM 10701 |
56 |
97.8 |
0.548 |
| pilC | Acinetobacter baylyi ADP1 |
53.015 |
97.311 |
0.516 |
| pilG | Neisseria gonorrhoeae MS11 |
52.897 |
97.066 |
0.513 |
| pilG | Neisseria meningitidis 44/76-A |
52.645 |
97.066 |
0.511 |
| pilC | Acinetobacter baumannii D1279779 |
52.141 |
97.066 |
0.506 |
| pilC | Vibrio cholerae strain A1552 |
41.562 |
97.066 |
0.403 |
| pilC | Vibrio campbellii strain DS40M4 |
40.796 |
98.289 |
0.401 |
| pilC | Thermus thermophilus HB27 |
37.845 |
97.555 |
0.369 |