Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GP482_RS07625 Genome accession   NZ_CP046875
Coordinates   1566927..1568186 (-) Length   419 a.a.
NCBI ID   WP_039696141.1    Uniprot ID   -
Organism   Streptococcus ruminicola strain CNU_77-61     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1561927..1573186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GP482_RS07595 (GP482_07595) - 1561986..1563560 (-) 1575 WP_039696142.1 membrane protein -
  GP482_RS09680 - 1563603..1563731 (-) 129 WP_267887989.1 hypothetical protein -
  GP482_RS07600 (GP482_07600) - 1563847..1564164 (-) 318 WP_006531413.1 DUF1292 domain-containing protein -
  GP482_RS07605 (GP482_07605) ruvX 1564197..1564616 (-) 420 WP_020917593.1 Holliday junction resolvase RuvX -
  GP482_RS07610 (GP482_07610) - 1564613..1564882 (-) 270 WP_003066890.1 IreB family regulatory phosphoprotein -
  GP482_RS07615 (GP482_07615) spx 1565130..1565528 (-) 399 WP_004233512.1 transcriptional regulator Spx -
  GP482_RS07620 (GP482_07620) recA 1565726..1566880 (-) 1155 WP_039696214.1 recombinase RecA Machinery gene
  GP482_RS07625 (GP482_07625) cinA 1566927..1568186 (-) 1260 WP_039696141.1 competence/damage-inducible protein A Machinery gene
  GP482_RS07630 (GP482_07630) - 1568300..1569502 (-) 1203 WP_074603092.1 MFS transporter -
  GP482_RS07635 (GP482_07635) - 1569625..1570182 (-) 558 WP_039696213.1 DNA-3-methyladenine glycosylase I -
  GP482_RS07640 (GP482_07640) ruvA 1570212..1570805 (-) 594 WP_039696140.1 Holliday junction branch migration protein RuvA -
  GP482_RS07645 (GP482_07645) mutL 1570806..1572746 (-) 1941 WP_039696139.1 DNA mismatch repair endonuclease MutL -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45817.10 Da        Isoelectric Point: 4.9154

>NTDB_id=409139 GP482_RS07625 WP_039696141.1 1566927..1568186(-) (cinA) [Streptococcus ruminicola strain CNU_77-61]
MKAEIIAVGTEILTGQITNTNAQFLSEEFAKLGIDVFFQTAVGDNEERLLSIIDLASKRSDLVVLCGGLGPTEDDLTKQT
LAKYLGRNLVFDEQASKRLDEFFATRPQFTRTANNERQAQLIEGSTPLQNSTGLAVGGVLEVDGVTYVVLPGPPSELKPM
VWDYLVPLLSSDHKQLYSRVLRFFGIGESQLVTVLSDLIDNQTDPTIAPYAKTGEVTLRLSTKADDIESAKEKLDQLEQK
ILSKKTLNSIPLENLLYGYGDDNSMARVVFDLLKKKHKTITAAESLTAGLFQSSIADFSGSSSVFNGGFVTYSIEEKSKM
LQIPLEELQEHGVVSHFTAEKMAEQSRKLTDADFGIGLTGVAGPDSLEGHPAGTVFIGIATREKVHSIRVLIGGRSRSDV
RHIACLYAFNLVRQALLQD

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=409139 GP482_RS07625 WP_039696141.1 1566927..1568186(-) (cinA) [Streptococcus ruminicola strain CNU_77-61]
ATGAAAGCTGAGATTATCGCTGTAGGAACAGAGATTTTAACAGGACAAATCACAAATACCAATGCACAATTTCTATCAGA
GGAATTTGCTAAGTTAGGGATTGATGTCTTTTTCCAAACGGCAGTTGGGGACAATGAAGAACGTCTTTTGTCTATCATTG
ATTTGGCAAGTAAGCGTAGCGATTTAGTTGTTCTCTGTGGTGGTTTAGGACCAACTGAGGATGATTTGACAAAGCAAACC
TTAGCAAAATATTTAGGGCGTAACCTGGTCTTTGACGAACAGGCAAGTAAACGTCTAGATGAGTTCTTTGCGACACGTCC
TCAATTTACAAGAACAGCTAATAATGAACGCCAAGCTCAACTGATTGAAGGTTCAACTCCTTTGCAAAATAGCACTGGTT
TGGCTGTAGGTGGTGTTCTGGAAGTTGATGGTGTTACTTATGTCGTTCTTCCTGGACCACCAAGTGAATTAAAACCTATG
GTTTGGGACTATTTAGTGCCATTGCTATCTAGTGACCACAAGCAATTGTATTCACGTGTCTTACGTTTCTTTGGTATCGG
GGAAAGTCAGTTGGTAACAGTTTTATCAGATTTGATTGACAACCAAACCGATCCAACCATTGCGCCATATGCTAAGACAG
GTGAAGTAACGCTGCGTTTGTCAACGAAAGCAGACGACATTGAATCAGCTAAGGAAAAACTAGACCAGCTAGAGCAAAAA
ATTCTTTCTAAGAAGACTTTAAATAGCATTCCACTTGAGAATTTGCTTTATGGTTACGGTGATGACAATAGTATGGCGCG
TGTTGTTTTTGATTTGCTTAAGAAAAAACACAAGACTATCACAGCTGCAGAAAGTTTAACAGCAGGGCTATTTCAATCAA
GTATTGCAGACTTCTCAGGCTCTTCATCAGTCTTTAATGGTGGTTTTGTGACTTATAGCATTGAAGAAAAATCAAAAATG
CTTCAGATTCCATTAGAAGAGTTGCAAGAACACGGGGTTGTTAGTCACTTTACAGCTGAGAAAATGGCTGAGCAATCTCG
CAAGTTAACAGATGCTGATTTTGGGATTGGATTGACAGGAGTTGCAGGACCAGATAGCTTAGAAGGCCACCCAGCGGGAA
CAGTTTTCATTGGTATTGCTACTAGAGAAAAAGTTCATTCTATTCGTGTTCTCATAGGTGGACGAAGCCGTTCAGATGTG
CGTCATATTGCATGTTTGTATGCATTTAACTTAGTACGTCAAGCTTTATTACAAGATTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(263-415)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

72.315

100

0.723
  cinA Streptococcus mutans UA159

72.422

99.523

0.721
  cinA Streptococcus mitis NCTC 12261

71.36

100

0.714
  cinA Streptococcus pneumoniae Rx1

70.406

100

0.704
  cinA Streptococcus pneumoniae TIGR4

70.406

100

0.704
  cinA Streptococcus pneumoniae R6

70.406

100

0.704
  cinA Streptococcus pneumoniae D39

70.167

100

0.702
  cinA Streptococcus suis isolate S10

54.567

99.284

0.542
  cinA Bacillus subtilis subsp. subtilis str. 168

45.972

100

0.463

Multiple sequence alignment