Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GP482_RS07620 Genome accession   NZ_CP046875
Coordinates   1565726..1566880 (-) Length   384 a.a.
NCBI ID   WP_039696214.1    Uniprot ID   A0A1H0ZUF9
Organism   Streptococcus ruminicola strain CNU_77-61     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1560726..1571880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GP482_RS07595 (GP482_07595) - 1561986..1563560 (-) 1575 WP_039696142.1 membrane protein -
  GP482_RS09680 - 1563603..1563731 (-) 129 WP_267887989.1 hypothetical protein -
  GP482_RS07600 (GP482_07600) - 1563847..1564164 (-) 318 WP_006531413.1 DUF1292 domain-containing protein -
  GP482_RS07605 (GP482_07605) ruvX 1564197..1564616 (-) 420 WP_020917593.1 Holliday junction resolvase RuvX -
  GP482_RS07610 (GP482_07610) - 1564613..1564882 (-) 270 WP_003066890.1 IreB family regulatory phosphoprotein -
  GP482_RS07615 (GP482_07615) spx 1565130..1565528 (-) 399 WP_004233512.1 transcriptional regulator Spx -
  GP482_RS07620 (GP482_07620) recA 1565726..1566880 (-) 1155 WP_039696214.1 recombinase RecA Machinery gene
  GP482_RS07625 (GP482_07625) cinA 1566927..1568186 (-) 1260 WP_039696141.1 competence/damage-inducible protein A Machinery gene
  GP482_RS07630 (GP482_07630) - 1568300..1569502 (-) 1203 WP_074603092.1 MFS transporter -
  GP482_RS07635 (GP482_07635) - 1569625..1570182 (-) 558 WP_039696213.1 DNA-3-methyladenine glycosylase I -
  GP482_RS07640 (GP482_07640) ruvA 1570212..1570805 (-) 594 WP_039696140.1 Holliday junction branch migration protein RuvA -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41293.95 Da        Isoelectric Point: 4.9865

>NTDB_id=409138 GP482_RS07620 WP_039696214.1 1565726..1566880(-) (recA) [Streptococcus ruminicola strain CNU_77-61]
MAKKTKKTEAITKKFGDERKKALDDALKLIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRG
NTQIKGTGDQKDSNIGKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTGELIKIASDLDIIKKAGAWFSYNGEKIGQGSE
NAKKYLADHPEIFDEIDHKVRVHYGLVEETEDEKAAKLSEESAATTENVDEVVLDLDDAIEIEE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=409138 GP482_RS07620 WP_039696214.1 1565726..1566880(-) (recA) [Streptococcus ruminicola strain CNU_77-61]
TTGGCTAAAAAGACAAAGAAAACAGAAGCTATCACGAAGAAATTCGGTGATGAGCGTAAAAAAGCACTTGATGATGCTTT
GAAATTAATTGAAAAAGATTTTGGTAAGGGAGCTGTTATGCGCCTTGGCGAACGCGCTGAACAAAAAGTTCAAGTGATGA
GTTCAGGTAGTTTGGCTCTTGATATCGCTCTTGGTGCAGGTGGTTACCCTAAAGGACGTATCATTGAAATCTATGGTCCT
GAAAGTTCAGGTAAAACAACTGTTGCCCTTCATGCTGTAGCACAAGCTCAAAAAGAAGGCGGTATCGCAGCCTTTATCGA
TGCTGAACATGCCCTTGACCCAGCTTATGCAGCAGCCCTTGGTGTTAATATTGATGAACTTCTTTTGTCACAACCTGATT
CAGGAGAACAAGGTCTTGAAATCGCTGGAAAATTGATTGATTCAGGTGCGGTTGATCTTGTTGTTGTCGACTCTGTTGCA
GCTCTTGTTCCACGTGCCGAAATCGATGGTGATATTGGTGATAACCACGTTGGTTTGCAAGCTCGTATGATGAGTCAAGC
TATGCGTAAACTATCAGCTTCTATCAATAAAACAAAAACAATTGCCATCTTTATCAACCAATTGCGTGAAAAAGTTGGTG
TTATGTTTGGTAACCCAGAAACTACACCTGGTGGACGTGCCCTTAAATTCTACTCTTCAGTTCGTCTAGATGTGCGAGGA
AACACACAAATCAAAGGTACTGGTGATCAAAAAGATAGCAACATTGGTAAAGAAACTAAAATCAAAGTTGTTAAAAACAA
AGTTGCTCCACCATTTAAAACTGCTGAAGTGGAAATCATGTATGGTGAAGGAATTTCACGCACTGGTGAATTGATTAAAA
TCGCTAGTGATTTGGATATCATTAAAAAAGCTGGTGCTTGGTTCTCTTACAACGGTGAGAAGATTGGTCAAGGTTCTGAA
AATGCTAAGAAATATTTGGCAGATCACCCAGAAATCTTTGACGAAATCGACCACAAAGTTCGTGTTCATTATGGACTTGT
TGAAGAAACTGAAGATGAAAAAGCAGCAAAACTTTCTGAAGAATCAGCAGCAACTACTGAAAATGTAGATGAAGTTGTTC
TTGATTTGGATGATGCAATCGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H0ZUF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

89.323

100

0.893
  recA Streptococcus mutans UA159

88.63

100

0.893
  recA Streptococcus mitis NCTC 12261

86.458

100

0.865
  recA Streptococcus mitis SK321

85.938

100

0.859
  recA Streptococcus pneumoniae D39

85.455

100

0.857
  recA Streptococcus pneumoniae Rx1

85.455

100

0.857
  recA Streptococcus pneumoniae R6

85.455

100

0.857
  recA Streptococcus pneumoniae TIGR4

85.455

100

0.857
  recA Lactococcus lactis subsp. cremoris KW2

78

91.146

0.711
  recA Latilactobacillus sakei subsp. sakei 23K

68.555

91.927

0.63
  recA Bacillus subtilis subsp. subtilis str. 168

69.301

85.677

0.594
  recA Neisseria gonorrhoeae strain FA1090

60.571

91.146

0.552
  recA Neisseria gonorrhoeae MS11

60.571

91.146

0.552
  recA Neisseria gonorrhoeae MS11

60.571

91.146

0.552
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.357

88.281

0.542
  recA Glaesserella parasuis strain SC1401

60.294

88.542

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

84.115

0.526
  recA Acinetobacter baylyi ADP1

59.412

88.542

0.526
  recA Acinetobacter baumannii D1279779

61.35

84.896

0.521
  recA Vibrio cholerae strain A1552

61.231

84.635

0.518
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

84.635

0.518
  recA Pseudomonas stutzeri DSM 10701

57.061

90.365

0.516
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.215

86.198

0.51
  recA Helicobacter pylori 26695

57.784

86.979

0.503
  recA Helicobacter pylori strain NCTC11637

57.784

86.979

0.503
  recA Ralstonia pseudosolanacearum GMI1000

59.306

82.552

0.49

Multiple sequence alignment