Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GPX94_RS04070 Genome accession   NZ_CP046848
Coordinates   883142..884266 (-) Length   374 a.a.
NCBI ID   WP_154115060.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain F8054     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 878142..889266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX94_RS04040 hemF 878724..879638 (-) 915 WP_078927454.1 oxygen-dependent coproporphyrinogen oxidase -
  GPX94_RS04045 - 879661..880218 (-) 558 WP_154115058.1 L-threonylcarbamoyladenylate synthase -
  GPX94_RS04050 purE 880416..880901 (+) 486 WP_078927456.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  GPX94_RS04055 - 880905..882032 (+) 1128 WP_154115059.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  GPX94_RS04060 - 882097..882666 (-) 570 WP_078927458.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  GPX94_RS04065 - 882672..883145 (-) 474 WP_078927459.1 DUF494 family protein -
  GPX94_RS04070 dprA 883142..884266 (-) 1125 WP_154115060.1 DNA-processing protein DprA Machinery gene
  GPX94_RS04075 - 884285..885346 (-) 1062 WP_229601124.1 LysM peptidoglycan-binding domain-containing protein -
  GPX94_RS04080 def 885534..886046 (+) 513 WP_206752144.1 peptide deformylase -
  GPX94_RS04085 fmt 886066..887013 (+) 948 WP_154115062.1 methionyl-tRNA formyltransferase -
  GPX94_RS04090 rsmB 887070..888353 (+) 1284 WP_154115063.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 41175.26 Da        Isoelectric Point: 6.3413

>NTDB_id=408862 GPX94_RS04070 WP_154115060.1 883142..884266(-) (dprA) [Vibrio cincinnatiensis strain F8054]
MQHKDLCAWLALSFTPKLTQKMITRLLSLDSLANMFDYSSQQWLALGLKPDQVDYLMHQAKREVEACLEWQSKEAGRHII
ALYDDSRYPPLLREVASPPKVLFVEGRCSTLVNPQIAIVGSRDATIDSRYIAQHFASQLVEHDLTVTSGLALGIDGYAHD
GALKASGSTIAVLGSGLECIYPTRHQSLAERIKADGALVSEFRPNTKPRPEYFPRRNRIISGLSLGVLVVEAAEKSGSLI
TARYALEQGRDVFVVPGPIHITNFQGSNRLIQQGACLVQTVDDILAEITLLTHWSQKSAISTQEDLFSPSNGQEELPFPE
LLANVGVEATPVDILAQRTHIPVQEVMMQLLELELLGQVVAVSGGYIRKGRGKL

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=408862 GPX94_RS04070 WP_154115060.1 883142..884266(-) (dprA) [Vibrio cincinnatiensis strain F8054]
ATGCAACACAAAGATCTCTGTGCCTGGCTCGCTTTAAGCTTTACACCGAAGCTAACGCAGAAGATGATTACGCGATTGTT
GAGCTTAGACTCTCTGGCAAACATGTTCGATTATTCCTCTCAGCAGTGGTTAGCTTTAGGACTGAAGCCAGATCAAGTGG
ATTATTTGATGCATCAGGCTAAGCGAGAGGTTGAAGCTTGTTTAGAGTGGCAATCGAAAGAGGCTGGGCGACATATTATT
GCTCTGTATGATGATTCTCGCTATCCCCCTTTATTGCGTGAGGTCGCATCTCCACCGAAAGTCTTGTTTGTAGAAGGGCG
ATGTTCGACTCTTGTGAACCCACAAATTGCGATTGTCGGTAGTCGAGATGCAACGATAGATAGTCGGTACATTGCCCAAC
ATTTTGCTTCGCAATTAGTGGAACATGACCTCACGGTTACCAGTGGGCTTGCTCTAGGAATTGACGGTTATGCGCACGAT
GGGGCTCTAAAAGCGTCAGGGTCAACCATTGCGGTTTTAGGTTCGGGGCTCGAATGTATTTATCCGACGAGGCATCAATC
CTTAGCTGAGCGAATAAAAGCCGATGGAGCTTTAGTCTCTGAATTTCGTCCTAATACAAAACCAAGGCCAGAATATTTCC
CGCGGCGTAACCGTATTATTAGTGGCTTATCATTAGGGGTCTTAGTGGTTGAAGCCGCTGAAAAAAGCGGTTCACTGATT
ACTGCTCGCTATGCTTTGGAGCAAGGACGAGACGTTTTTGTGGTTCCAGGCCCAATACATATCACCAATTTTCAGGGGAG
TAACCGTCTTATTCAGCAGGGAGCTTGTCTTGTTCAAACGGTGGACGATATTCTCGCTGAAATCACTTTGCTGACTCATT
GGTCACAAAAATCTGCCATTTCCACTCAAGAAGACCTTTTTTCTCCATCAAATGGTCAAGAAGAATTGCCATTTCCCGAG
CTGTTAGCTAACGTAGGAGTAGAAGCGACACCCGTTGATATTCTTGCACAGCGGACCCATATCCCTGTACAAGAAGTCAT
GATGCAGCTCTTAGAGCTTGAGCTTTTAGGGCAAGTTGTTGCAGTTTCCGGTGGCTATATTCGTAAGGGGAGGGGCAAGC
TATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-279)

DprA winged helix domain (DprA_WH)

(320-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

61.559

99.465

0.612
  dprA Vibrio campbellii strain DS40M4

62.228

98.396

0.612
  dprA Glaesserella parasuis strain SC1401

43.767

100

0.441
  dprA Haemophilus influenzae Rd KW20

44.776

89.572

0.401
  dprA Neisseria meningitidis MC58

36.842

100

0.393
  dprA Neisseria meningitidis strain C311

36.842

100

0.393
  dprA Legionella pneumophila strain ERS1305867

44.479

87.166

0.388
  dprA Neisseria gonorrhoeae MS11

35.338

100

0.377
  dprA Neisseria gonorrhoeae strain FA1090

35.088

100

0.374
  dprA Acinetobacter baumannii D1279779

40.909

88.235

0.361

Multiple sequence alignment