Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GPY55_RS25780 Genome accession   NZ_CP046831
Coordinates   3283555..3284667 (+) Length   370 a.a.
NCBI ID   WP_031847061.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2012AW-0224     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3278555..3289667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY55_RS25760 rsmB 3279475..3280758 (-) 1284 WP_031847062.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  GPY55_RS25765 fmt 3280839..3281786 (-) 948 WP_025606610.1 methionyl-tRNA formyltransferase -
  GPY55_RS25770 def 3281820..3282338 (-) 519 WP_005461416.1 peptide deformylase -
  GPY55_RS25775 - 3282477..3283571 (+) 1095 WP_005497418.1 LysM peptidoglycan-binding domain-containing protein -
  GPY55_RS25780 dprA 3283555..3284667 (+) 1113 WP_031847061.1 DNA-processing protein DprA Machinery gene
  GPY55_RS25785 - 3284670..3285149 (+) 480 WP_031823674.1 DUF494 family protein -
  GPY55_RS25790 - 3285228..3285797 (+) 570 WP_031847060.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  GPY55_RS25795 - 3285867..3286994 (-) 1128 WP_031847059.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  GPY55_RS25800 purE 3286999..3287484 (-) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  GPY55_RS25805 - 3287684..3288241 (+) 558 WP_005461456.1 L-threonylcarbamoyladenylate synthase -
  GPY55_RS25810 hemF 3288289..3289206 (+) 918 WP_031847058.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39904.56 Da        Isoelectric Point: 6.9697

>NTDB_id=408567 GPY55_RS25780 WP_031847061.1 3283555..3284667(+) (dprA) [Vibrio parahaemolyticus strain 2012AW-0224]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIISSSSEQLYQFGLTNKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRSLAQRVTKNGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSANQSIDLFSTLNNEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=408567 GPY55_RS25780 WP_031847061.1 3283555..3284667(+) (dprA) [Vibrio parahaemolyticus strain 2012AW-0224]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTCAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAGTTCCTCTTCTGAACAGCTCTATCAATTTGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATCTTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATAGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CTCGTCAATTTGCGGCAGAATTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTAGTTTAGCGCAGCGAGTAACAAAAAATGGCGCACTGGTTTCTGAGTTTCGTCCCAATGCCAAGCCTCGAGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGCTAATCAAAGTATCGATTTATTTTCTACGTTAAATAATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

83.784

100

0.838
  dprA Vibrio cholerae strain A1552

58.919

100

0.589
  dprA Glaesserella parasuis strain SC1401

46.667

100

0.473
  dprA Legionella pneumophila strain ERS1305867

47.546

88.108

0.419
  dprA Haemophilus influenzae Rd KW20

45.994

91.081

0.419
  dprA Neisseria meningitidis strain C311

37.179

100

0.392
  dprA Neisseria meningitidis MC58

37.179

100

0.392
  dprA Neisseria gonorrhoeae MS11

36.34

100

0.381
  dprA Neisseria gonorrhoeae strain FA1090

36.082

100

0.378

Multiple sequence alignment