Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   GPY55_RS20390 Genome accession   NZ_CP046831
Coordinates   2150878..2151162 (-) Length   94 a.a.
NCBI ID   WP_021449594.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2012AW-0224     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2150236..2160205 2150878..2151162 within 0


Gene organization within MGE regions


Location: 2150236..2160205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY55_RS20385 rrtA 2150236..2150787 (+) 552 WP_031847271.1 rhombosortase -
  GPY55_RS20390 comEA 2150878..2151162 (-) 285 WP_021449594.1 ComEA family DNA-binding protein Machinery gene
  GPY55_RS20395 ppiD 2151313..2153172 (-) 1860 WP_031847272.1 peptidylprolyl isomerase -
  GPY55_RS20400 - 2153372..2153644 (-) 273 WP_005382341.1 HU family DNA-binding protein -
  GPY55_RS20405 lon 2153837..2156188 (-) 2352 WP_083135793.1 endopeptidase La -
  GPY55_RS20410 clpX 2156320..2157600 (-) 1281 WP_005460618.1 ATP-dependent protease ATP-binding subunit ClpX -
  GPY55_RS20415 clpP 2157672..2158298 (-) 627 WP_005460620.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  GPY55_RS20420 tig 2158404..2159708 (-) 1305 WP_015296437.1 trigger factor -
  GPY55_RS27160 - 2160002..2160187 (-) 186 WP_020904052.1 hypothetical protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10249.91 Da        Isoelectric Point: 5.8425

>NTDB_id=408556 GPY55_RS20390 WP_021449594.1 2150878..2151162(-) (comEA) [Vibrio parahaemolyticus strain 2012AW-0224]
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL

Nucleotide


Download         Length: 285 bp        

>NTDB_id=408556 GPY55_RS20390 WP_021449594.1 2150878..2151162(-) (comEA) [Vibrio parahaemolyticus strain 2012AW-0224]
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACCGAGCATGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTAAAAGGAATT
GGTGAAGCAACAATCAAGAAAAACGAAGACCGCATTCTTCTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(32-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

100

100

1
  comEA Vibrio campbellii strain DS40M4

77.895

100

0.787
  comEA Vibrio cholerae C6706

62.766

100

0.628
  comEA Vibrio cholerae strain A1552

62.766

100

0.628
  comEA/comE1 Glaesserella parasuis strain SC1401

56.452

65.957

0.372
  comE1/comEA Haemophilus influenzae Rd KW20

56.452

65.957

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comEA Acinetobacter baylyi ADP1

47.222

76.596

0.362

Multiple sequence alignment