Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GPX87_RS06370 Genome accession   NZ_CP046815
Coordinates   1353566..1354690 (+) Length   374 a.a.
NCBI ID   WP_078927460.1    Uniprot ID   A0A1T4SAC8
Organism   Vibrio cincinnatiensis strain 1398-82     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1348566..1359690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX87_RS06350 rsmB 1349479..1350762 (-) 1284 WP_078927463.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  GPX87_RS06355 fmt 1350819..1351766 (-) 948 WP_078927462.1 methionyl-tRNA formyltransferase -
  GPX87_RS06360 def 1351786..1352298 (-) 513 WP_206752144.1 peptide deformylase -
  GPX87_RS06365 - 1352486..1353547 (+) 1062 WP_238096917.1 LysM peptidoglycan-binding domain-containing protein -
  GPX87_RS06370 dprA 1353566..1354690 (+) 1125 WP_078927460.1 DNA-processing protein DprA Machinery gene
  GPX87_RS06375 - 1354687..1355160 (+) 474 WP_078927459.1 DUF494 family protein -
  GPX87_RS06380 - 1355166..1355735 (+) 570 WP_078927458.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  GPX87_RS06385 - 1355800..1356927 (-) 1128 WP_078927457.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  GPX87_RS06390 purE 1356931..1357416 (-) 486 WP_078927456.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  GPX87_RS06395 - 1357614..1358171 (+) 558 WP_078927455.1 L-threonylcarbamoyladenylate synthase -
  GPX87_RS06400 hemF 1358194..1359108 (+) 915 WP_078927454.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 41154.25 Da        Isoelectric Point: 6.4271

>NTDB_id=408272 GPX87_RS06370 WP_078927460.1 1353566..1354690(+) (dprA) [Vibrio cincinnatiensis strain 1398-82]
MQHKDLCAWLALSFTPKLTQKMITRLLSLDSLANMFDYSSQQWLALGLKPDQVDYLMHQAKREVEACLEWQSKEAGRHII
ALYDDSRYPPLLREVASPPKVLFVEGRCSTLVNPQIAIVGSRDATIDSRYIAQHFASQLVEHDLTVTSGLALGIDGYAHD
GALKASGSTIAVLGSGLECIYPTRHQSLAERIKADGALVSEFRPNTKPRPEYFPRRNRIISGLSLGVLVVEAAEKSGSLI
TARYALEQGRDVFVVPGPIHITNFQGSNRLIQQGACLVQTVDDILAEITLLTHWSQKSAISAQEDLFSPSNGQEELPFPE
LLANVGVEATPVDILAQRTHIPVQEVMMQLLELELLGHVVAVSGGYIRKGRGKL

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=408272 GPX87_RS06370 WP_078927460.1 1353566..1354690(+) (dprA) [Vibrio cincinnatiensis strain 1398-82]
ATGCAACACAAAGATCTCTGTGCCTGGCTCGCTTTAAGCTTTACACCGAAGCTAACGCAGAAGATGATTACGCGATTGTT
GAGCTTAGACTCTCTGGCAAACATGTTCGATTATTCCTCTCAGCAGTGGTTAGCTTTAGGACTGAAGCCAGATCAAGTGG
ATTATTTGATGCATCAGGCTAAGCGAGAGGTTGAAGCTTGTTTAGAGTGGCAATCGAAAGAGGCTGGGCGACATATTATT
GCTCTGTATGATGATTCGCGCTATCCCCCTTTATTGCGTGAGGTCGCATCTCCACCGAAAGTCTTGTTTGTAGAAGGGCG
ATGTTCGACTCTTGTGAACCCACAAATTGCGATTGTCGGTAGTCGAGATGCAACGATAGATAGTCGGTACATTGCCCAAC
ATTTTGCTTCGCAATTAGTGGAACATGACCTCACGGTTACCAGTGGGCTTGCTCTAGGAATTGACGGTTATGCGCACGAT
GGGGCTCTAAAAGCGTCAGGGTCAACCATTGCGGTTTTAGGTTCGGGGCTCGAATGTATTTATCCGACGAGGCATCAATC
CTTAGCTGAGCGAATAAAAGCCGATGGAGCTTTAGTCTCTGAATTTCGTCCTAATACAAAACCAAGGCCAGAATATTTCC
CGCGGCGTAACCGTATTATTAGTGGCTTATCATTAGGGGTCTTAGTGGTTGAAGCCGCTGAAAAAAGCGGTTCACTGATT
ACTGCTCGCTATGCTTTGGAGCAAGGACGAGACGTTTTTGTGGTTCCAGGCCCAATACATATCACCAATTTTCAGGGGAG
TAACCGTCTTATTCAGCAGGGAGCTTGTCTTGTTCAAACGGTGGACGATATTCTCGCTGAAATCACTTTGCTGACTCATT
GGTCACAAAAATCTGCCATTTCCGCTCAAGAAGACCTTTTTTCTCCATCAAATGGTCAAGAAGAATTGCCATTTCCCGAG
CTGTTAGCTAACGTAGGAGTAGAAGCGACACCCGTTGATATTCTTGCACAGCGGACCCATATCCCTGTACAAGAAGTCAT
GATGCAGCTCTTAGAGCTTGAGCTTTTAGGGCACGTTGTTGCAGTTTCCGGTGGCTATATTCGTAAGGGGAGGGGCAAGC
TATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-279)

DprA winged helix domain (DprA_WH)

(320-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T4SAC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

61.828

99.465

0.615
  dprA Vibrio campbellii strain DS40M4

62.5

98.396

0.615
  dprA Glaesserella parasuis strain SC1401

43.767

100

0.441
  dprA Haemophilus influenzae Rd KW20

44.444

91.444

0.406
  dprA Legionella pneumophila strain ERS1305867

44.479

87.166

0.388
  dprA Neisseria meningitidis strain C311

35.84

100

0.382
  dprA Neisseria meningitidis MC58

35.84

100

0.382
  dprA Neisseria gonorrhoeae MS11

35.338

100

0.377
  dprA Neisseria gonorrhoeae strain FA1090

35.088

100

0.374

Multiple sequence alignment