Detailed information NTG0408104

Bioinformatically predicted

Overview

• Name: pilQ
• Type: Machinery gene
• Locus tag: GPY47_RS17050
• Genome accession: NZ_CP046806
• Coordinates: 1897045..1898790 (-)
• Length: 581 a.a.
• NCBI ID: WP_005382765.1
• Uniprot ID: A0AAW9BLD2
• Organism: Vibrio alginolyticus strain 2439-01
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1892045..1903790

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY47_RS17030	-	1892733..1893572 (-)	840	WP_005381301.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	-
GPY47_RS17035	-	1893642..1895153 (-)	1512	WP_025768079.1	SPOR domain-containing protein	-
GPY47_RS17040	aroB	1895206..1896306 (-)	1101	WP_005381318.1	3-dehydroquinate synthase	-
GPY47_RS17045	aroK	1896339..1896857 (-)	519	WP_005381319.1	shikimate kinase AroK	-
GPY47_RS17050	pilQ	1897045..1898790 (-)	1746	WP_005382765.1	type IV pilus secretin PilQ	Machinery gene
GPY47_RS17055	pilP	1898816..1899331 (-)	516	WP_005382766.1	pilus assembly protein PilP	Machinery gene
GPY47_RS17060	pilO	1899321..1899914 (-)	594	WP_017633532.1	type 4a pilus biogenesis protein PilO	Machinery gene
GPY47_RS17065	pilN	1899907..1900482 (-)	576	WP_017821732.1	PilN domain-containing protein	Machinery gene
GPY47_RS17070	pilM	1900466..1901482 (-)	1017	WP_017821733.1	type IV pilus biogenesis protein PilM	Machinery gene

Sequence

Protein

• Length: 581 a.a.
• Molecular weight: 63707.73 Da
• Isoelectric Point: 4.4593

>NTDB_id=408104 GPY47_RS17050 WP_005382765.1 1897045..1898790(-) (pilQ) [Vibrio alginolyticus strain 2439-01]
MKMRQGLTRTPRILTGLFSLWLFVFLAPLAAAEEVSSNALKSIDFRTNKDKDAVIVVELASPAAIVDIKRVQEGLSIDLL
NTSVKDEQLYLLDVKDFSTVVESVEVFRDTSTTRLVAHINEEYMHDYRLTGRFLEIKVAKIKPNEKAPDKSILEREGKLI
SINFQDIPVRNVLQLIADYNQFNLVVSDSVEGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPTDELDLREKQQ
LEKQKLTEEMGELSSEIIKVNFAKASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIEVIREIIESLDIPVK
QVQIEARIVTINEGNMDELGIRWGFTSINGSNTVGGSIENNLATIGLYNGEGGDDGGDGDGVGIDDFLNVNLAATSPNAT
SIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATTVTFKKAVLSLKVTPQI
TPDNRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRR
SYENVGKSELLIFVTPKVVIQ

Nucleotide

• Length: 1746 bp

>NTDB_id=408104 GPY47_RS17050 WP_005382765.1 1897045..1898790(-) (pilQ) [Vibrio alginolyticus strain 2439-01]
ATGAAAATGAGACAAGGATTAACACGTACACCAAGGATACTTACTGGGCTCTTCTCCTTATGGTTGTTTGTATTTTTAGC
CCCTTTAGCGGCAGCTGAAGAAGTTTCGTCCAATGCCCTAAAAAGTATCGACTTTCGAACTAATAAAGATAAAGACGCCG
TGATTGTCGTCGAATTGGCGTCACCGGCCGCGATTGTAGATATCAAGCGTGTACAGGAAGGGTTAAGTATCGATTTGCTT
AACACTTCAGTAAAAGACGAGCAATTGTATCTCCTAGACGTGAAAGACTTTTCGACTGTGGTTGAGAGCGTAGAAGTGTT
TCGCGACACCTCGACGACGCGCTTGGTTGCGCACATCAATGAAGAATACATGCATGATTACCGTTTAACGGGGCGTTTTT
TGGAAATCAAAGTAGCGAAGATCAAACCCAATGAGAAAGCCCCAGATAAAAGCATTTTAGAAAGAGAAGGTAAGCTTATT
TCGATTAACTTCCAAGATATTCCTGTGCGAAACGTCTTGCAGCTTATTGCTGATTACAACCAATTCAATTTGGTTGTCTC
CGACTCTGTAGAAGGCAACCTCACGCTTCGTCTTGATGGTGTCCCTTGGCAGCAAGTGCTGGATATTATTTTGCAAGTTA
AGGGGTTAGATAAGCGTGTTGATGGCAACGTGATTTTAGTTGCTCCGACTGATGAGCTGGACTTGCGTGAGAAGCAGCAG
TTAGAAAAACAAAAATTGACGGAAGAAATGGGAGAGCTTTCATCTGAAATCATCAAAGTTAATTTTGCTAAAGCATCAGA
CATTGCGGAGATGATCAATGGTGAAGGAAATATCAGCATGCTGTCAGAGCGCGGCAGTATGACCATTGATGAGCGAACTA
ACTCGTTATTGATTAGAGAGTTACCTGAAAACATCGAGGTGATTCGAGAAATTATTGAGTCTTTGGATATTCCAGTTAAA
CAGGTTCAAATTGAGGCGCGTATTGTGACCATCAATGAAGGTAACATGGACGAGTTAGGGATTCGTTGGGGTTTTACGTC
TATTAATGGCAGTAATACAGTGGGTGGTTCTATTGAGAACAACCTCGCCACGATCGGTCTCTATAATGGAGAAGGGGGTG
ATGACGGTGGTGACGGTGATGGAGTAGGGATCGATGACTTCCTAAATGTAAACTTAGCTGCAACCAGCCCGAATGCGACC
AGCATTGCTTTTCAGGTCGCAAAGTTAGGTTCAGACACCTTGTTGGATCTTGAGCTTTCTGCGCTGCAACAAGAGTCTAA
AGCTGAGATTATCTCGAGCCCACGTTTGATCACTACCAATAAGAAACCTGCCTATATCGAACAAGGTACAGAGATTCCTT
ACCTAGAGTCATCATCAAGTGGTGCAACGACGGTGACGTTCAAAAAGGCGGTATTAAGTTTGAAGGTAACCCCGCAAATC
ACACCGGATAACCGCTTAGTATTGGATTTAAGTGTCACGCAAGATAGACCAGGACAAGTCGTGAAGACAGGCACTGGTGA
AGCTGTTGCGATTGATACTCAACGTATCGGGACGCAAGTGTTAGTGAATAACGGTGAAACGGTCGTTCTTGGTGGTATTT
TTCAGCACAGCATTACTAACTCGGTGGACAAAGTGCCTTTGTTGGGCGACCTGCCGCTATTAGGTGCTCTTTTTCGTCGA
AGTTATGAGAATGTTGGCAAAAGTGAGCTGTTAATTTTCGTCACGCCTAAGGTGGTGATTCAGTAG

Domains

Predicted by InterproScan.

• Bacterial type II/III secretion system short domain (Secretin_N) (256-321)

• Bacterial type II and III secretion system protein (Secretin) (421-579)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilQ	Vibrio campbellii strain DS40M4	92.943	100	0.929
pilQ	Vibrio cholerae strain A1552	74.742	100	0.749
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	74.742	100	0.749
pilQ	Pseudomonas aeruginosa PAK	39.896	99.656	0.398
pilQ	Legionella pneumophila strain Lp02	40.608	96.213	0.391
pilQ	Legionella pneumophila strain ERS1305867	40.608	96.213	0.391
comQ	Acinetobacter baylyi ADP1	37.414	99.828	0.373
pilQ	Acinetobacter baumannii D1279779	35.906	100	0.368
pilQ	Acinetobacter baumannii strain A118	35.906	100	0.368