Detailed information NTG0040771

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: PSEFU_RS12205
• Genome accession: NC_015556
• Coordinates: 2637784..2638995 (-)
• Length: 403 a.a.
• NCBI ID: WP_013791548.1
• Uniprot ID: -
• Organism: Pseudomonas fulva 12-X
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2632784..2643995

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSEFU_RS12180 (Psefu_2449)	-	2632852..2633622 (+)	771	WP_013791543.1	3-hydroxybutyrate dehydrogenase	-
PSEFU_RS12185 (Psefu_2450)	-	2633669..2635624 (+)	1956	WP_013791544.1	acetoacetate--CoA ligase	-
PSEFU_RS12190 (Psefu_2451)	-	2635768..2636484 (+)	717	WP_013791545.1	substrate-binding periplasmic protein	-
PSEFU_RS12195 (Psefu_2452)	-	2636546..2637058 (+)	513	WP_013791546.1	thioredoxin family protein	-
PSEFU_RS12200 (Psefu_2453)	-	2637066..2637677 (-)	612	WP_013791547.1	DJ-1/PfpI family protein	-
PSEFU_RS12205 (Psefu_2454)	pilU	2637784..2638995 (-)	1212	WP_013791548.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
PSEFU_RS12210 (Psefu_2455)	-	2639139..2639417 (+)	279	WP_013791549.1	peptidylprolyl isomerase	-
PSEFU_RS12215 (Psefu_2456)	-	2639509..2640447 (+)	939	WP_013791550.1	L-threonylcarbamoyladenylate synthase	-
PSEFU_RS12220 (Psefu_2457)	-	2640462..2642906 (-)	2445	WP_013791551.1	YbcC family protein	-

Sequence

Protein

• Length: 403 a.a.
• Molecular weight: 44474.75 Da
• Isoelectric Point: 6.1332

>NTDB_id=40771 PSEFU_RS12205 WP_013791548.1 2637784..2638995(-) (pilU) [Pseudomonas fulva 12-X]
MDLHAMLKILSSQDGSDLYLSTGAPPCAKFNGVLKALSSEPLKAGEVAQIADGVMDSAQREEFERELEMNLAISLNGVGR
FRINIFKQRNEVSIVARNIKLDIPRFEDLKLPEVLLKTVMEKRGLVLFVGGTGSGKSTSLAALIDYRNRNSGGHIITIED
PVEYVHRHKKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFADTGHLAISTLHANNANQALDRI
INFFPEDRRPQLLNDLGNNLKAFVSQRLVKTVDGKRRAAVEVLLGTPTIRDLIKRNEFSEIKEIMEKSRNLGMQTFDQAL
IDLVNEGAIDEEEAVKNADSANNVRLKLKLYRETSTTPAPAAAPVTPAASAPKVAAPADWGLELKLEEIEQDTPPEDPGR
QGI

Nucleotide

• Length: 1212 bp

>NTDB_id=40771 PSEFU_RS12205 WP_013791548.1 2637784..2638995(-) (pilU) [Pseudomonas fulva 12-X]
ATGGATCTCCACGCAATGCTGAAAATCCTCTCCAGCCAGGACGGCTCGGACCTGTACCTGTCGACCGGCGCGCCGCCCTG
TGCGAAGTTCAACGGCGTGCTCAAGGCCCTGAGCAGCGAGCCGCTGAAGGCTGGCGAGGTGGCGCAGATCGCCGACGGGG
TGATGGATAGCGCCCAGCGCGAAGAGTTCGAGCGCGAGCTGGAGATGAACCTGGCGATTTCCCTCAATGGCGTCGGGCGT
TTTCGCATCAACATCTTCAAGCAGCGCAACGAGGTGTCCATCGTCGCGCGCAACATCAAGCTCGATATCCCGCGTTTCGA
AGATTTGAAGCTGCCCGAGGTGCTGCTCAAAACAGTGATGGAAAAGCGCGGCCTGGTGCTGTTCGTCGGCGGCACCGGCT
CGGGCAAGTCGACCTCCCTGGCGGCGCTGATCGATTACCGCAATCGCAACAGCGGCGGGCACATCATCACCATCGAGGAC
CCGGTGGAGTACGTGCACCGCCACAAGAAATCGATCATCAACCAGCGTGAAGTGGGCGTGGACACCCGCAGCTTCCACGC
CGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCCTGATCGGCGAGATCCGCGACCGGGAAACCATGGAGCACG
CCCTGGCCTTCGCCGACACCGGCCACCTGGCGATTTCCACCCTGCACGCCAACAACGCCAACCAGGCGCTGGATCGCATC
ATCAATTTCTTCCCCGAAGACCGCCGCCCGCAGTTGCTCAACGACCTGGGCAACAACCTCAAGGCTTTCGTGTCCCAGCG
TCTGGTCAAGACGGTCGACGGCAAACGCCGCGCCGCCGTCGAGGTGCTGCTGGGCACGCCGACCATCCGCGACCTGATCA
AGCGCAACGAGTTTTCCGAAATCAAGGAGATCATGGAAAAGTCCAGAAACCTCGGCATGCAGACCTTCGACCAGGCGCTG
ATCGACCTGGTCAACGAGGGCGCCATCGACGAGGAAGAGGCGGTGAAGAACGCCGACTCGGCCAACAATGTGCGCCTCAA
ACTCAAGCTCTATCGCGAGACGTCCACGACGCCAGCGCCAGCGGCGGCGCCTGTTACGCCCGCGGCCAGCGCGCCCAAGG
TAGCCGCCCCGGCCGATTGGGGGCTGGAACTGAAGCTGGAAGAGATCGAGCAGGACACGCCACCCGAAGACCCGGGCCGC
CAGGGCATCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (111-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	56.901	88.089	0.501
pilU	Acinetobacter baylyi ADP1	52.514	88.834	0.467
pilU	Vibrio cholerae strain A1552	51.558	87.593	0.452
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	38.776	97.27	0.377