Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSEFU_RS14400 Genome accession   NC_015556
Coordinates   3103452..3104108 (-) Length   218 a.a.
NCBI ID   WP_013791980.1    Uniprot ID   A0A561E2R0
Organism   Pseudomonas fulva 12-X     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3098452..3109108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSEFU_RS14370 (Psefu_2883) murB 3099548..3100567 (-) 1020 WP_013791974.1 UDP-N-acetylmuramate dehydrogenase -
  PSEFU_RS14375 (Psefu_2884) - 3100564..3101028 (-) 465 WP_013791975.1 low molecular weight protein-tyrosine-phosphatase -
  PSEFU_RS14380 (Psefu_2885) kdsB 3101028..3101792 (-) 765 WP_013791976.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSEFU_RS14385 (Psefu_2886) - 3101794..3101979 (-) 186 WP_013791977.1 Trm112 family protein -
  PSEFU_RS14390 (Psefu_2887) lpxK 3102020..3103027 (-) 1008 WP_013791978.1 tetraacyldisaccharide 4'-kinase -
  PSEFU_RS14395 (Psefu_2888) - 3103027..3103455 (-) 429 WP_013791979.1 ExbD/TolR family protein -
  PSEFU_RS14400 (Psefu_2889) exbB 3103452..3104108 (-) 657 WP_013791980.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSEFU_RS14405 (Psefu_2890) comA 3104181..3106403 (-) 2223 WP_198136648.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSEFU_RS14410 (Psefu_2891) - 3106530..3107774 (-) 1245 WP_013791982.1 lipoprotein-releasing ABC transporter permease subunit -
  PSEFU_RS14415 (Psefu_2892) lolD 3107774..3108475 (-) 702 WP_013791983.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23726.11 Da        Isoelectric Point: 8.5248

>NTDB_id=40772 PSEFU_RS14400 WP_013791980.1 3103452..3104108(-) (exbB) [Pseudomonas fulva 12-X]
MWELVKSGGWVMLPIILCSIAALGIIAERLWTLRVSRVTPPHLLGQVWRWIKDKQLNSQKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHEMERYLNALGTIAGIAPLLGLLGTVIAMIDIFSSFMGGSMANPALLAGGIAKALITTAS
GLTVAIPALFFHRFLQRRVDELVVGMEQEAIKLVEMVQGERDVDLAEEPKPAKGSKKA

Nucleotide


Download         Length: 657 bp        

>NTDB_id=40772 PSEFU_RS14400 WP_013791980.1 3103452..3104108(-) (exbB) [Pseudomonas fulva 12-X]
GTGTGGGAACTGGTTAAATCTGGCGGCTGGGTGATGCTGCCGATCATTTTGTGTTCAATCGCCGCCCTGGGCATCATTGC
CGAACGCCTTTGGACGCTGCGTGTCAGCCGCGTCACGCCGCCTCATCTGCTGGGGCAGGTCTGGCGCTGGATCAAGGACA
AGCAGCTCAATAGTCAGAAGCTCAAGGAGCTGCGTGCCGACTCGCCGCTGGGTGAAATTCTCGCCGCGGGCCTGGCCAAT
TCCAAGCACGGTCGCGAGATCATGAAGGAATGCATCGAGGAGGCCGCCGCTCGGGTGATCCACGAGATGGAGCGCTACCT
CAACGCGCTGGGTACCATCGCCGGGATCGCGCCGCTGCTCGGCCTGCTCGGTACGGTGATCGCCATGATCGACATCTTCA
GCTCGTTCATGGGCGGCAGCATGGCCAACCCGGCACTGCTCGCCGGTGGCATCGCCAAGGCGCTGATCACCACCGCTTCG
GGCCTTACCGTCGCTATTCCTGCGCTGTTCTTCCACCGTTTCCTGCAGCGCCGTGTCGATGAACTTGTCGTCGGCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAATGGTCCAGGGCGAGCGCGACGTCGACCTGGCCGAGGAGCCCAAGCCGGCCAAGG
GGAGCAAAAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A561E2R0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.957

94.954

0.826

Multiple sequence alignment