Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GPY17_RS21990 | Genome accession | NZ_CP046782 |
| Coordinates | 2754773..2755177 (+) | Length | 134 a.a. |
| NCBI ID | WP_069545806.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain 2013V-1244 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2749773..2760177
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY17_RS21975 | pdhR | 2751806..2752573 (-) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| GPY17_RS21980 | ampD | 2752979..2753530 (-) | 552 | WP_005479703.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GPY17_RS21985 | nadC | 2753623..2754510 (+) | 888 | WP_025638275.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GPY17_RS21990 | pilA | 2754773..2755177 (+) | 405 | WP_069545806.1 | pilin | Machinery gene |
| GPY17_RS21995 | pilB | 2755177..2756862 (+) | 1686 | WP_069545807.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GPY17_RS22000 | pilC | 2756887..2758110 (+) | 1224 | WP_005479682.1 | type II secretion system F family protein | Machinery gene |
| GPY17_RS22005 | pilD | 2758175..2759044 (+) | 870 | WP_042772912.1 | A24 family peptidase | Machinery gene |
| GPY17_RS22010 | coaE | 2759045..2759659 (+) | 615 | WP_005480887.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 13686.58 Da Isoelectric Point: 6.4433
>NTDB_id=407652 GPY17_RS21990 WP_069545806.1 2754773..2755177(+) (pilA) [Vibrio parahaemolyticus strain 2013V-1244]
MKHSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVAKSEAATALGSLRALVTPAELKLQQDGELSGVVADLGGSAS
HALGAITTSGANISAATLTFTFNTGSLNGDAITLTKTSSGWTCTDGTTVLDNCN
MKHSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVAKSEAATALGSLRALVTPAELKLQQDGELSGVVADLGGSAS
HALGAITTSGANISAATLTFTFNTGSLNGDAITLTKTSSGWTCTDGTTVLDNCN
Nucleotide
Download Length: 405 bp
>NTDB_id=407652 GPY17_RS21990 WP_069545806.1 2754773..2755177(+) (pilA) [Vibrio parahaemolyticus strain 2013V-1244]
ATGAAACACAGTAAACAGAAAAAACAGCAAGGTTTTACCTTGATTGAATTGATGATTGTGGTGGCGATTATTGGGGTGTT
GTCAGCAATTGCAGTACCTGCTTATCAAAATTATGTCGCTAAAAGTGAAGCGGCAACGGCATTAGGAAGTTTGAGAGCAT
TAGTCACTCCTGCTGAACTTAAACTTCAACAAGATGGAGAGCTATCTGGTGTAGTAGCTGACTTAGGTGGATCTGCATCA
CATGCATTAGGTGCTATTACAACATCTGGTGCTAACATAAGCGCTGCTACTCTAACCTTCACGTTTAATACAGGCTCATT
AAATGGTGATGCTATCACACTAACCAAAACAAGTTCTGGTTGGACATGTACTGATGGCACTACGGTTTTAGACAACTGTA
ACTAA
ATGAAACACAGTAAACAGAAAAAACAGCAAGGTTTTACCTTGATTGAATTGATGATTGTGGTGGCGATTATTGGGGTGTT
GTCAGCAATTGCAGTACCTGCTTATCAAAATTATGTCGCTAAAAGTGAAGCGGCAACGGCATTAGGAAGTTTGAGAGCAT
TAGTCACTCCTGCTGAACTTAAACTTCAACAAGATGGAGAGCTATCTGGTGTAGTAGCTGACTTAGGTGGATCTGCATCA
CATGCATTAGGTGCTATTACAACATCTGGTGCTAACATAAGCGCTGCTACTCTAACCTTCACGTTTAATACAGGCTCATT
AAATGGTGATGCTATCACACTAACCAAAACAAGTTCTGGTTGGACATGTACTGATGGCACTACGGTTTTAGACAACTGTA
ACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
52.143 |
100 |
0.545 |
| pilA | Pseudomonas aeruginosa PAK |
45.652 |
100 |
0.47 |
| pilA | Vibrio cholerae strain A1552 |
41.304 |
100 |
0.425 |
| pilA | Vibrio cholerae C6706 |
41.304 |
100 |
0.425 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.304 |
100 |
0.425 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.969 |
95.522 |
0.41 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
39.535 |
96.269 |
0.381 |
| pilA/pilA1 | Eikenella corrodens VA1 |
35.766 |
100 |
0.366 |