Detailed information NTG0407655

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GPY17_RS22005
• Genome accession: NZ_CP046782
• Coordinates: 2758175..2759044 (+)
• Length: 289 a.a.
• NCBI ID: WP_042772912.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 2013V-1244
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2753175..2764044

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY17_RS21985	nadC	2753623..2754510 (+)	888	WP_025638275.1	carboxylating nicotinate-nucleotide diphosphorylase	-
GPY17_RS21990	pilA	2754773..2755177 (+)	405	WP_069545806.1	pilin	Machinery gene
GPY17_RS21995	pilB	2755177..2756862 (+)	1686	WP_069545807.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GPY17_RS22000	pilC	2756887..2758110 (+)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
GPY17_RS22005	pilD	2758175..2759044 (+)	870	WP_042772912.1	A24 family peptidase	Machinery gene
GPY17_RS22010	coaE	2759045..2759659 (+)	615	WP_005480887.1	dephospho-CoA kinase	-
GPY17_RS22015	zapD	2759687..2760427 (+)	741	WP_023624252.1	cell division protein ZapD	-
GPY17_RS22020	yacG	2760496..2760690 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
GPY17_RS22025	rplS	2761005..2761358 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
GPY17_RS22030	trmD	2761400..2762143 (-)	744	WP_025552264.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
GPY17_RS22035	rimM	2762171..2762719 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
GPY17_RS22040	rpsP	2762748..2762996 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32387.47 Da
• Isoelectric Point: 7.1971

>NTDB_id=407655 GPY17_RS22005 WP_042772912.1 2758175..2759044(+) (pilD) [Vibrio parahaemolyticus strain 2013V-1244]
MEVFQYYPWLFVVFASILGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFILIAATFIDLDTMLLPDQLTLP
LTWTGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWASLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=407655 GPY17_RS22005 WP_042772912.1 2758175..2759044(+) (pilD) [Vibrio parahaemolyticus strain 2013V-1244]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTAGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTGAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTATCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGACTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGCCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGCAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTTACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.581	100	0.886
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	51.866	92.734	0.481
pilD	Acinetobacter nosocomialis M2	51.493	92.734	0.478
pilD	Neisseria gonorrhoeae MS11	47.464	95.502	0.453