Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   GPY31_RS18780 Genome accession   NZ_CP046760
Coordinates   2118564..2118848 (-) Length   94 a.a.
NCBI ID   WP_021449594.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain AM51552     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2117304..2127891 2118564..2118848 within 0


Gene organization within MGE regions


Location: 2117304..2127891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY31_RS18770 - 2117304..2117918 (-) 615 WP_005482520.1 DTW domain-containing protein -
  GPY31_RS18775 rrtA 2117922..2118473 (+) 552 WP_042772456.1 rhombosortase -
  GPY31_RS18780 comEA 2118564..2118848 (-) 285 WP_021449594.1 ComEA family DNA-binding protein Machinery gene
  GPY31_RS18785 ppiD 2118999..2120858 (-) 1860 WP_069545239.1 peptidylprolyl isomerase -
  GPY31_RS18790 - 2121058..2121330 (-) 273 WP_005382341.1 HU family DNA-binding protein -
  GPY31_RS18795 lon 2121523..2123874 (-) 2352 WP_015296438.1 endopeptidase La -
  GPY31_RS18800 clpX 2124006..2125286 (-) 1281 WP_005460618.1 ATP-dependent protease ATP-binding subunit ClpX -
  GPY31_RS18805 clpP 2125358..2125984 (-) 627 WP_005460620.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  GPY31_RS18810 tig 2126090..2127394 (-) 1305 WP_005460612.1 trigger factor -
  GPY31_RS24810 - 2127688..2127873 (-) 186 WP_017448702.1 hypothetical protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10249.91 Da        Isoelectric Point: 5.8425

>NTDB_id=407291 GPY31_RS18780 WP_021449594.1 2118564..2118848(-) (comEA) [Vibrio parahaemolyticus strain AM51552]
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL

Nucleotide


Download         Length: 285 bp        

>NTDB_id=407291 GPY31_RS18780 WP_021449594.1 2118564..2118848(-) (comEA) [Vibrio parahaemolyticus strain AM51552]
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACTGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTGAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(32-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

100

100

1
  comEA Vibrio campbellii strain DS40M4

77.895

100

0.787
  comEA Vibrio cholerae C6706

62.766

100

0.628
  comEA Vibrio cholerae strain A1552

62.766

100

0.628
  comEA/comE1 Glaesserella parasuis strain SC1401

56.452

65.957

0.372
  comE1/comEA Haemophilus influenzae Rd KW20

56.452

65.957

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comEA Acinetobacter baylyi ADP1

47.222

76.596

0.362

Multiple sequence alignment