Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GPY31_RS10845 | Genome accession | NZ_CP046760 |
| Coordinates | 426700..427104 (-) | Length | 134 a.a. |
| NCBI ID | WP_069545806.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain AM51552 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 421700..432104
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY31_RS10825 | coaE | 422218..422832 (-) | 615 | WP_005480887.1 | dephospho-CoA kinase | - |
| GPY31_RS10830 | pilD | 422833..423702 (-) | 870 | WP_042772912.1 | A24 family peptidase | Machinery gene |
| GPY31_RS10835 | pilC | 423767..424990 (-) | 1224 | WP_005479682.1 | type II secretion system F family protein | Machinery gene |
| GPY31_RS10840 | pilB | 425015..426700 (-) | 1686 | WP_069545807.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GPY31_RS10845 | pilA | 426700..427104 (-) | 405 | WP_069545806.1 | pilin | Machinery gene |
| GPY31_RS10850 | nadC | 427367..428254 (-) | 888 | WP_025638275.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GPY31_RS10855 | ampD | 428347..428898 (+) | 552 | WP_005479703.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GPY31_RS10860 | pdhR | 429304..430071 (+) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 13686.58 Da Isoelectric Point: 6.4433
>NTDB_id=407281 GPY31_RS10845 WP_069545806.1 426700..427104(-) (pilA) [Vibrio parahaemolyticus strain AM51552]
MKHSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVAKSEAATALGSLRALVTPAELKLQQDGELSGVVADLGGSAS
HALGAITTSGANISAATLTFTFNTGSLNGDAITLTKTSSGWTCTDGTTVLDNCN
MKHSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVAKSEAATALGSLRALVTPAELKLQQDGELSGVVADLGGSAS
HALGAITTSGANISAATLTFTFNTGSLNGDAITLTKTSSGWTCTDGTTVLDNCN
Nucleotide
Download Length: 405 bp
>NTDB_id=407281 GPY31_RS10845 WP_069545806.1 426700..427104(-) (pilA) [Vibrio parahaemolyticus strain AM51552]
ATGAAACACAGTAAACAGAAAAAACAGCAAGGTTTTACCTTGATTGAATTGATGATTGTGGTGGCGATTATTGGGGTGTT
GTCAGCAATTGCAGTACCTGCTTATCAAAATTATGTCGCTAAAAGTGAAGCGGCAACGGCATTAGGAAGTTTGAGAGCAT
TAGTCACTCCTGCTGAACTTAAACTTCAACAAGATGGAGAGCTATCTGGTGTAGTAGCTGACTTAGGTGGATCTGCATCA
CATGCATTAGGTGCTATTACAACATCTGGTGCTAACATAAGCGCTGCTACTCTAACCTTCACGTTTAATACAGGCTCATT
AAATGGTGATGCTATCACACTAACCAAAACAAGTTCTGGTTGGACATGTACTGATGGCACTACGGTTTTAGACAACTGTA
ACTAA
ATGAAACACAGTAAACAGAAAAAACAGCAAGGTTTTACCTTGATTGAATTGATGATTGTGGTGGCGATTATTGGGGTGTT
GTCAGCAATTGCAGTACCTGCTTATCAAAATTATGTCGCTAAAAGTGAAGCGGCAACGGCATTAGGAAGTTTGAGAGCAT
TAGTCACTCCTGCTGAACTTAAACTTCAACAAGATGGAGAGCTATCTGGTGTAGTAGCTGACTTAGGTGGATCTGCATCA
CATGCATTAGGTGCTATTACAACATCTGGTGCTAACATAAGCGCTGCTACTCTAACCTTCACGTTTAATACAGGCTCATT
AAATGGTGATGCTATCACACTAACCAAAACAAGTTCTGGTTGGACATGTACTGATGGCACTACGGTTTTAGACAACTGTA
ACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
52.143 |
100 |
0.545 |
| pilA | Pseudomonas aeruginosa PAK |
45.652 |
100 |
0.47 |
| pilA | Vibrio cholerae strain A1552 |
41.304 |
100 |
0.425 |
| pilA | Vibrio cholerae C6706 |
41.304 |
100 |
0.425 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.304 |
100 |
0.425 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.969 |
95.522 |
0.41 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
39.535 |
96.269 |
0.381 |
| pilA/pilA1 | Eikenella corrodens VA1 |
35.766 |
100 |
0.366 |