Detailed information NTG0407278

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GPY31_RS10830
• Genome accession: NZ_CP046760
• Coordinates: 422833..423702 (-)
• Length: 289 a.a.
• NCBI ID: WP_042772912.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain AM51552
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 417833..428702

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY31_RS10795	rpsP	418888..419136 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
GPY31_RS10800	rimM	419165..419713 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
GPY31_RS10805	trmD	419741..420484 (+)	744	WP_025552264.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
GPY31_RS10810	rplS	420526..420879 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
GPY31_RS10815	yacG	421187..421381 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
GPY31_RS10820	zapD	421450..422190 (-)	741	WP_023624252.1	cell division protein ZapD	-
GPY31_RS10825	coaE	422218..422832 (-)	615	WP_005480887.1	dephospho-CoA kinase	-
GPY31_RS10830	pilD	422833..423702 (-)	870	WP_042772912.1	A24 family peptidase	Machinery gene
GPY31_RS10835	pilC	423767..424990 (-)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
GPY31_RS10840	pilB	425015..426700 (-)	1686	WP_069545807.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GPY31_RS10845	pilA	426700..427104 (-)	405	WP_069545806.1	pilin	Machinery gene
GPY31_RS10850	nadC	427367..428254 (-)	888	WP_025638275.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32387.47 Da
• Isoelectric Point: 7.1971

>NTDB_id=407278 GPY31_RS10830 WP_042772912.1 422833..423702(-) (pilD) [Vibrio parahaemolyticus strain AM51552]
MEVFQYYPWLFVVFASILGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFILIAATFIDLDTMLLPDQLTLP
LTWTGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWASLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=407278 GPY31_RS10830 WP_042772912.1 422833..423702(-) (pilD) [Vibrio parahaemolyticus strain AM51552]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTAGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTGAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTATCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGACTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGCCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGCAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTTACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.581	100	0.886
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	51.866	92.734	0.481
pilD	Acinetobacter nosocomialis M2	51.493	92.734	0.478
pilD	Neisseria gonorrhoeae MS11	47.464	95.502	0.453