Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   GO596_RS02340 Genome accession   NZ_CP046628
Coordinates   479064..480107 (-) Length   347 a.a.
NCBI ID   WP_198289264.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU 77-23     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 474064..485107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO596_RS02295 (GO596_02295) - 474231..474683 (-) 453 WP_157339146.1 ABC transporter permease -
  GO596_RS02300 (GO596_02300) - 474739..474936 (-) 198 WP_027968026.1 helix-turn-helix transcriptional regulator -
  GO596_RS02305 (GO596_02305) - 475094..476293 (-) 1200 WP_045798327.1 acetate kinase -
  GO596_RS02310 (GO596_02310) comYH 476347..477303 (-) 957 WP_157339147.1 class I SAM-dependent methyltransferase Machinery gene
  GO596_RS02315 (GO596_02315) comGG 477357..477692 (-) 336 WP_198362600.1 competence type IV pilus minor pilin ComGG -
  GO596_RS02320 (GO596_02320) comYF 477679..478116 (-) 438 WP_157339148.1 competence type IV pilus minor pilin ComGF Machinery gene
  GO596_RS02325 (GO596_02325) comYE 478100..478393 (-) 294 WP_157339149.1 competence type IV pilus minor pilin ComGE Machinery gene
  GO596_RS02330 (GO596_02330) comGD 478347..478787 (-) 441 WP_074534076.1 competence type IV pilus minor pilin ComGD -
  GO596_RS02335 (GO596_02335) comYC 478762..479064 (-) 303 WP_021141433.1 competence type IV pilus major pilin ComGC Machinery gene
  GO596_RS02340 (GO596_02340) comYB 479064..480107 (-) 1044 WP_198289264.1 competence type IV pilus assembly protein ComGB Machinery gene
  GO596_RS02345 (GO596_02345) comYA 480031..480972 (-) 942 WP_027968018.1 competence type IV pilus ATPase ComGA Machinery gene
  GO596_RS02350 (GO596_02350) - 481041..481409 (-) 369 WP_021141429.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39715.08 Da        Isoelectric Point: 9.6792

>NTDB_id=406226 GO596_RS02340 WP_198289264.1 479064..480107(-) (comYB) [Streptococcus equinus strain CNU 77-23]
MSKLIALLETDISVLKRQKSKKLPFKKQQKVIQLFNNLFNSGFTLTEIVSFLRRSQLLQESYVDSMQESLLSGATLADMM
ARLGFSDTIVTQIALADVHGNCQQSLVKIDRYLASMSVVRKKLIEVATYPLILLSFLILIMLGLKNYLLPQLESQNFATQ
IIAHFPMIFLGSFVLLGLAVVLGFFYARRLSPIYLFSQISRLPIVGRFIRLYLTAYYAREWGNLIGQGIDLMEIVALMQH
QKSRLFQEIGKDIQQALLSGQSFHQKVLDYPFFLRELSLMIEYGEVKSKLGRELDIYAEETWQTFFSQLTQATQLIQPLV
FVFVALIIVLIYVAMLLPMYQNMGGNF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=406226 GO596_RS02340 WP_198289264.1 479064..480107(-) (comYB) [Streptococcus equinus strain CNU 77-23]
ATGAGCAAATTGATAGCCTTGCTCGAGACGGACATATCAGTTTTGAAGAGGCAAAAATCGAAAAAATTGCCCTTTAAGAA
ACAACAGAAAGTCATTCAATTATTTAATAATTTGTTTAACAGTGGCTTTACCTTAACTGAAATAGTGTCCTTTTTGAGAC
GGAGTCAGTTATTGCAGGAATCTTATGTGGATAGTATGCAGGAGTCCTTGCTGAGTGGCGCAACTTTAGCAGATATGATG
GCAAGGTTAGGCTTTTCAGACACGATTGTGACTCAGATTGCTTTGGCTGATGTTCATGGAAATTGTCAGCAAAGTCTTGT
AAAAATCGATCGTTATTTGGCTAGCATGTCTGTTGTGCGAAAGAAGTTGATTGAAGTGGCGACTTATCCTTTGATTTTAT
TAAGTTTTTTGATTTTGATAATGCTTGGCTTAAAAAATTATTTATTGCCGCAACTTGAAAGTCAAAATTTTGCTACTCAG
ATTATAGCCCATTTTCCAATGATTTTCTTGGGGAGCTTTGTACTTTTAGGACTAGCAGTTGTTCTGGGATTTTTCTATGC
TAGGCGTTTATCACCAATCTATCTTTTTAGCCAGATTAGTCGATTGCCGATAGTAGGACGATTCATTCGCCTTTATCTGA
CTGCTTATTATGCGCGTGAGTGGGGAAATCTTATTGGGCAGGGAATTGATTTGATGGAAATTGTAGCCTTGATGCAACAT
CAAAAGTCGCGTCTTTTTCAAGAGATTGGTAAGGATATACAGCAAGCTCTTTTGTCTGGTCAATCATTTCACCAAAAGGT
CTTAGATTATCCCTTCTTTTTGAGGGAACTGAGCCTGATGATTGAGTACGGAGAGGTTAAGTCAAAACTTGGTCGGGAGC
TTGATATCTATGCTGAGGAAACATGGCAGACTTTCTTCAGCCAATTAACTCAGGCAACACAGCTGATTCAACCGCTAGTT
TTTGTCTTTGTTGCTTTAATTATTGTTTTAATCTACGTGGCAATGCTTTTGCCAATGTATCAAAATATGGGAGGAAATTT
TTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

62.865

98.559

0.62
  comYB Streptococcus mutans UA159

62.573

98.559

0.617
  comYB Streptococcus gordonii str. Challis substr. CH1

58.892

98.847

0.582
  comGB/cglB Streptococcus mitis NCTC 12261

57.864

97.118

0.562
  comGB/cglB Streptococcus mitis SK321

57.567

97.118

0.559
  comGB/cglB Streptococcus pneumoniae Rx1

56.973

97.118

0.553
  comGB/cglB Streptococcus pneumoniae D39

56.973

97.118

0.553
  comGB/cglB Streptococcus pneumoniae R6

56.973

97.118

0.553
  comGB/cglB Streptococcus pneumoniae TIGR4

56.973

97.118

0.553
  comGB Lactococcus lactis subsp. cremoris KW2

50.592

97.406

0.493

Multiple sequence alignment