Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   GO596_RS02325 Genome accession   NZ_CP046628
Coordinates   478100..478393 (-) Length   97 a.a.
NCBI ID   WP_157339149.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU 77-23     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 473100..483393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO596_RS02290 (GO596_02290) - 473584..474219 (-) 636 WP_027968028.1 CPBP family intramembrane glutamic endopeptidase -
  GO596_RS02295 (GO596_02295) - 474231..474683 (-) 453 WP_157339146.1 ABC transporter permease -
  GO596_RS02300 (GO596_02300) - 474739..474936 (-) 198 WP_027968026.1 helix-turn-helix transcriptional regulator -
  GO596_RS02305 (GO596_02305) - 475094..476293 (-) 1200 WP_045798327.1 acetate kinase -
  GO596_RS02310 (GO596_02310) comYH 476347..477303 (-) 957 WP_157339147.1 class I SAM-dependent methyltransferase Machinery gene
  GO596_RS02315 (GO596_02315) comGG 477357..477692 (-) 336 WP_198362600.1 competence type IV pilus minor pilin ComGG -
  GO596_RS02320 (GO596_02320) comYF 477679..478116 (-) 438 WP_157339148.1 competence type IV pilus minor pilin ComGF Machinery gene
  GO596_RS02325 (GO596_02325) comYE 478100..478393 (-) 294 WP_157339149.1 competence type IV pilus minor pilin ComGE Machinery gene
  GO596_RS02330 (GO596_02330) comGD 478347..478787 (-) 441 WP_074534076.1 competence type IV pilus minor pilin ComGD -
  GO596_RS02335 (GO596_02335) comYC 478762..479064 (-) 303 WP_021141433.1 competence type IV pilus major pilin ComGC Machinery gene
  GO596_RS02340 (GO596_02340) comYB 479064..480107 (-) 1044 WP_198289264.1 competence type IV pilus assembly protein ComGB Machinery gene
  GO596_RS02345 (GO596_02345) comYA 480031..480972 (-) 942 WP_027968018.1 competence type IV pilus ATPase ComGA Machinery gene
  GO596_RS02350 (GO596_02350) - 481041..481409 (-) 369 WP_021141429.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 11014.90 Da        Isoelectric Point: 6.8788

>NTDB_id=406224 GO596_RS02325 WP_157339149.1 478100..478393(-) (comYE) [Streptococcus equinus strain CNU 77-23]
MVIIKRQKLKAYILLESLVALALLATITILVLGEMDKNRHQMQDSLHQQEVLNVATMAAQTGQDDLVMNGVEVHITRRDG
ELYVYDGQKEVMHVKKN

Nucleotide


Download         Length: 294 bp        

>NTDB_id=406224 GO596_RS02325 WP_157339149.1 478100..478393(-) (comYE) [Streptococcus equinus strain CNU 77-23]
GTGGTAATTATAAAAAGACAGAAACTAAAAGCTTACATACTCCTTGAAAGTTTGGTTGCTTTAGCTTTGCTAGCTACTAT
TACAATTCTTGTTTTGGGAGAAATGGATAAAAATCGCCACCAGATGCAAGACAGCTTACATCAGCAAGAAGTTCTCAATG
TCGCTACTATGGCTGCTCAAACAGGACAAGATGATTTGGTGATGAATGGTGTTGAGGTTCATATTACTAGACGAGACGGA
GAACTTTATGTCTACGATGGGCAAAAAGAGGTGATGCATGTTAAGAAGAACTAG

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

50

98.969

0.495
  comYE Streptococcus mutans UA159

50

98.969

0.495
  comGE/cglE Streptococcus pneumoniae Rx1

43.011

95.876

0.412
  comGE/cglE Streptococcus pneumoniae D39

43.011

95.876

0.412
  comGE/cglE Streptococcus pneumoniae R6

43.011

95.876

0.412
  comGE/cglE Streptococcus pneumoniae TIGR4

43.011

95.876

0.412
  comGE/cglE Streptococcus mitis SK321

41.935

95.876

0.402
  comGE/cglE Streptococcus mitis NCTC 12261

41.935

95.876

0.402

Multiple sequence alignment