Detailed information NTG0406223

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: GO596_RS02320
• Genome accession: NZ_CP046628
• Coordinates: 477679..478116 (-)
• Length: 145 a.a.
• NCBI ID: WP_157339148.1
• Uniprot ID: -
• Organism: Streptococcus equinus strain CNU 77-23
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 472679..483116

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GO596_RS02285 (GO596_02285)	proC	472762..473532 (+)	771	WP_024344501.1	pyrroline-5-carboxylate reductase	-
GO596_RS02290 (GO596_02290)	-	473584..474219 (-)	636	WP_027968028.1	CPBP family intramembrane glutamic endopeptidase	-
GO596_RS02295 (GO596_02295)	-	474231..474683 (-)	453	WP_157339146.1	ABC transporter permease	-
GO596_RS02300 (GO596_02300)	-	474739..474936 (-)	198	WP_027968026.1	helix-turn-helix transcriptional regulator	-
GO596_RS02305 (GO596_02305)	-	475094..476293 (-)	1200	WP_045798327.1	acetate kinase	-
GO596_RS02310 (GO596_02310)	comYH	476347..477303 (-)	957	WP_157339147.1	class I SAM-dependent methyltransferase	Machinery gene
GO596_RS02315 (GO596_02315)	comGG	477357..477692 (-)	336	WP_198362600.1	competence type IV pilus minor pilin ComGG	-
GO596_RS02320 (GO596_02320)	comYF	477679..478116 (-)	438	WP_157339148.1	competence type IV pilus minor pilin ComGF	Machinery gene
GO596_RS02325 (GO596_02325)	comYE	478100..478393 (-)	294	WP_157339149.1	competence type IV pilus minor pilin ComGE	Machinery gene
GO596_RS02330 (GO596_02330)	comGD	478347..478787 (-)	441	WP_074534076.1	competence type IV pilus minor pilin ComGD	-
GO596_RS02335 (GO596_02335)	comYC	478762..479064 (-)	303	WP_021141433.1	competence type IV pilus major pilin ComGC	Machinery gene
GO596_RS02340 (GO596_02340)	comYB	479064..480107 (-)	1044	WP_198289264.1	competence type IV pilus assembly protein ComGB	Machinery gene
GO596_RS02345 (GO596_02345)	comYA	480031..480972 (-)	942	WP_027968018.1	competence type IV pilus ATPase ComGA	Machinery gene
GO596_RS02350 (GO596_02350)	-	481041..481409 (-)	369	WP_021141429.1	DUF1033 family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16620.88 Da
• Isoelectric Point: 5.9137

>NTDB_id=406223 GO596_RS02320 WP_157339148.1 477679..478116(-) (comYF) [Streptococcus equinus strain CNU 77-23]
MLRRTRLKAFTLLESLVALLVISGTVLVYQGLTQSISQNVYYLSDNEENEWLLFSQQLRSELERCHLDCVSDNKLYVSKD
DKKLAYGLSKADDFRKTNASGKGYQPMLFGVNSSSIRQDGNNILIKLRMDNGMEREFVYTFDEAS

Nucleotide

• Length: 438 bp

>NTDB_id=406223 GO596_RS02320 WP_157339148.1 477679..478116(-) (comYF) [Streptococcus equinus strain CNU 77-23]
ATGTTAAGAAGAACTAGACTAAAGGCTTTTACGTTACTTGAAAGTTTGGTTGCTTTGCTGGTTATTTCAGGGACAGTTCT
GGTTTATCAAGGGCTAACGCAGTCAATTTCACAAAATGTTTATTACTTGTCTGATAACGAAGAAAATGAGTGGCTTTTAT
TTTCTCAGCAGCTACGCTCAGAATTAGAACGATGCCACTTAGATTGTGTTTCTGACAATAAACTTTATGTTAGTAAGGAT
GATAAGAAATTAGCTTATGGGCTATCAAAAGCAGATGATTTTCGTAAAACAAATGCTTCTGGCAAAGGCTATCAGCCAAT
GTTATTTGGTGTTAATTCTTCTAGCATTCGTCAGGATGGTAATAATATTTTGATTAAGCTGCGAATGGATAATGGTATGG
AGAGAGAGTTTGTTTACACTTTTGATGAGGCAAGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (42-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	55.714	96.552	0.538
comYF	Streptococcus mutans UA159	55	96.552	0.531
comGF	Lactococcus lactis subsp. cremoris KW2	47.826	95.172	0.455
comGF/cglF	Streptococcus pneumoniae Rx1	47.101	95.172	0.448
comGF/cglF	Streptococcus pneumoniae D39	47.101	95.172	0.448
comGF/cglF	Streptococcus pneumoniae R6	47.101	95.172	0.448
comGF/cglF	Streptococcus pneumoniae TIGR4	47.101	95.172	0.448
comGF/cglF	Streptococcus mitis NCTC 12261	45.324	95.862	0.434
comGF/cglF	Streptococcus mitis SK321	44.604	95.862	0.428