Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GOQ09_RS21520 Genome accession   NZ_CP046622
Coordinates   4604424..4605653 (+) Length   409 a.a.
NCBI ID   WP_157615544.1    Uniprot ID   -
Organism   Variovorax paradoxus strain CSUSB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4599424..4610653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOQ09_RS21490 (GOQ09_21480) cgtA 4599498..4600574 (-) 1077 WP_126746974.1 Obg family GTPase CgtA -
  GOQ09_RS21495 (GOQ09_21485) rpmA 4600645..4600905 (-) 261 WP_028259150.1 50S ribosomal protein L27 -
  GOQ09_RS21500 (GOQ09_21490) rplU 4600918..4601229 (-) 312 WP_157615540.1 50S ribosomal protein L21 -
  GOQ09_RS21505 (GOQ09_21495) - 4601421..4602413 (+) 993 WP_157616804.1 polyprenyl synthetase family protein -
  GOQ09_RS21515 (GOQ09_21505) pilB 4602655..4604394 (+) 1740 WP_157615542.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GOQ09_RS21520 (GOQ09_21510) pilC 4604424..4605653 (+) 1230 WP_157615544.1 type II secretion system F family protein Machinery gene
  GOQ09_RS21525 (GOQ09_21515) - 4605653..4606618 (+) 966 WP_157615546.1 A24 family peptidase -
  GOQ09_RS21530 (GOQ09_21520) coaE 4606629..4607231 (+) 603 WP_157615549.1 dephospho-CoA kinase -
  GOQ09_RS21535 (GOQ09_21525) - 4607207..4608799 (+) 1593 WP_242630907.1 MBOAT family protein -
  GOQ09_RS21540 (GOQ09_21530) - 4608801..4609841 (+) 1041 WP_157615551.1 hypothetical protein -
  GOQ09_RS21545 (GOQ09_21535) zapD 4609869..4610624 (+) 756 WP_157615553.1 cell division protein ZapD -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44659.29 Da        Isoelectric Point: 9.7441

>NTDB_id=406119 GOQ09_RS21520 WP_157615544.1 4604424..4605653(+) (pilC) [Variovorax paradoxus strain CSUSB]
MATVASKRTSNTLKESVYEWEGKDRNGKLVRGELRAAGENQVQAALRRQGVLASKIKKRRMRSGKTIKPKDIAIFTRQLA
TMMKAGVPLLQSFDIVGRGNANPSVAKLLNDIRSDVETGTSLSAAFRKFPKYFDNLYCNLVEAGEAAGILEDLLDRLATY
MEKTEAIKSKIKSALMYPTSVVVVAFVVVAIIMIFVIPAFKQVFTSFGADLPAPTLFVMAMSEFFVSYWWLIFGGIGGGI
YFFLQAWKRNEKVQRVMDRALLRVPIFGTLIEKSCVARWTRTLATMFAAGVPLVEALDSVGGASGNTVYGDATAKIQQEV
STGTSLTTAMTNVNLFPSMVIQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGTIIGGIVVSMYL
PIFKLGQVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=406119 GOQ09_RS21520 WP_157615544.1 4604424..4605653(+) (pilC) [Variovorax paradoxus strain CSUSB]
ATGGCAACAGTGGCATCCAAGCGCACTTCAAACACGCTCAAGGAATCTGTCTACGAGTGGGAAGGCAAGGACCGCAACGG
CAAGCTGGTGCGCGGCGAACTCCGCGCGGCCGGCGAGAACCAAGTGCAGGCCGCATTGCGCCGCCAGGGCGTTCTTGCAT
CCAAGATCAAGAAGCGCCGCATGCGCTCGGGCAAGACGATCAAGCCCAAGGACATCGCGATCTTCACGCGCCAACTGGCA
ACGATGATGAAGGCGGGCGTTCCCTTGCTGCAGTCGTTCGACATCGTCGGCCGGGGCAACGCCAACCCGAGCGTTGCCAA
GCTGTTGAACGACATCCGCAGCGACGTGGAGACCGGAACCTCGCTTTCGGCGGCCTTCCGCAAGTTTCCGAAGTATTTCG
ACAACCTCTACTGCAACCTGGTGGAGGCTGGCGAGGCCGCCGGTATCCTGGAAGACCTGCTGGACCGCCTTGCCACCTAC
ATGGAAAAGACCGAGGCGATCAAGTCGAAGATCAAGTCGGCGCTGATGTATCCGACGTCGGTGGTGGTGGTGGCGTTTGT
CGTGGTGGCCATCATCATGATCTTCGTGATTCCTGCGTTCAAGCAGGTGTTCACTTCCTTCGGTGCCGATCTGCCCGCCC
CAACGCTCTTCGTGATGGCCATGAGTGAGTTCTTCGTCTCGTACTGGTGGCTGATCTTCGGCGGAATTGGCGGGGGCATT
TACTTCTTCCTGCAGGCCTGGAAGCGCAACGAAAAAGTGCAACGCGTGATGGACCGCGCACTGCTGCGCGTGCCGATCTT
CGGCACTCTCATCGAAAAATCGTGCGTGGCCCGCTGGACCCGCACCCTGGCCACCATGTTTGCCGCGGGCGTTCCACTGG
TCGAAGCACTCGATTCCGTGGGTGGCGCATCGGGCAATACCGTTTACGGCGACGCCACGGCCAAGATCCAGCAAGAGGTC
TCGACCGGCACCAGCCTCACCACCGCCATGACCAACGTCAACCTGTTTCCCTCGATGGTGATCCAGATGACGGCCATCGG
TGAAGAGTCCGGCTCCATCGACCACATGCTGGGCAAGGCCGCCGACTTCTACGAATCCGAAGTGGACGACATGGTGGCCG
GCCTCTCGAGCCTGATGGAGCCCATCATCATCGTGTTCCTGGGCACGATCATCGGCGGCATCGTGGTGTCCATGTACCTG
CCTATCTTCAAGCTGGGCCAAGTCGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.25

97.8

0.531
  pilG Neisseria gonorrhoeae MS11

53.149

97.066

0.516
  pilG Neisseria meningitidis 44/76-A

52.897

97.066

0.513
  pilC Acinetobacter baylyi ADP1

51.508

97.311

0.501
  pilC Acinetobacter baumannii D1279779

49.874

97.066

0.484
  pilC Legionella pneumophila strain ERS1305867

49.495

96.822

0.479
  pilC Vibrio cholerae strain A1552

40.686

99.756

0.406
  pilC Thermus thermophilus HB27

38.425

100

0.394
  pilC Vibrio campbellii strain DS40M4

39.702

98.533

0.391

Multiple sequence alignment