Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GOC52_RS16165 Genome accession   NZ_CP046588
Coordinates   3531900..3533159 (+) Length   419 a.a.
NCBI ID   WP_191849884.1    Uniprot ID   -
Organism   Stenotrophomonas sp. SXG-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3526900..3538159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOC52_RS16145 pilR 3527193..3528566 (+) 1374 WP_010481514.1 sigma-54 dependent transcriptional regulator Regulator
  GOC52_RS16150 pilB 3528752..3530485 (-) 1734 WP_191849881.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GOC52_RS16155 - 3530551..3530970 (-) 420 WP_049425142.1 pilin -
  GOC52_RS16160 - 3531079..3531540 (-) 462 WP_191849882.1 pilin -
  GOC52_RS16165 pilC 3531900..3533159 (+) 1260 WP_191849884.1 type II secretion system F family protein Machinery gene
  GOC52_RS16170 - 3533168..3534031 (+) 864 WP_049447482.1 A24 family peptidase -
  GOC52_RS16175 coaE 3534043..3534654 (+) 612 WP_097049714.1 dephospho-CoA kinase -
  GOC52_RS16180 - 3534813..3535199 (-) 387 WP_191849886.1 hypothetical protein -
  GOC52_RS16185 - 3535682..3537049 (-) 1368 WP_032952284.1 HAMP domain-containing sensor histidine kinase -
  GOC52_RS16190 - 3537012..3537689 (-) 678 WP_005410804.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45698.02 Da        Isoelectric Point: 10.1293

>NTDB_id=405703 GOC52_RS16165 WP_191849884.1 3531900..3533159(+) (pilC) [Stenotrophomonas sp. SXG-1]
MSVSRSAIKKEPVARTTTELQPFVWEGTDKRGVKMKGEQVAKNANLLRAELRRQGINPGTVKPKPKPLFGAAGSKVSPKD
IAFFSRQMATMMKSGVPIVSALDIIASGHKNPRMKKMVEGIRADIEGGSSLYEAVSKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPAMVVVVALVVSAIMLIFVVPQFEEVFRGFGADLPAFTQMIVNLSRFMVSWWWL
IAIVAIGAVVAFTMAYKRSPNMQHTMDRLILRVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
GVLRMRDDVSVGYPVNVAMKQLNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFIGVVV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=405703 GOC52_RS16165 WP_191849884.1 3531900..3533159(+) (pilC) [Stenotrophomonas sp. SXG-1]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCCGTGGCTCGCACCACCACGGAGCTGCAACCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAAGGGGAGCAGGTCGCCAAGAACGCGAATCTGCTGCGGGCGGAACTGCGGCGCC
AGGGCATCAACCCCGGCACGGTAAAGCCCAAGCCGAAGCCACTGTTCGGAGCAGCCGGCAGCAAGGTTTCACCAAAGGAC
ATTGCCTTCTTCAGCCGTCAGATGGCGACGATGATGAAGTCCGGTGTGCCGATCGTCTCAGCGCTGGACATCATCGCAAG
TGGGCATAAGAACCCACGCATGAAGAAGATGGTGGAAGGGATCCGCGCCGATATCGAGGGCGGTTCCTCGCTATATGAGG
CGGTCAGCAAGCATCCCGTGCAGTTCGACGAGCTCTACCGGAACCTTGTCCGGGCCGGGGAAGGCGCCGGTGTGCTTGAA
ACGGTGCTGGACACGGTCGCCACCTACAAGGAAAACATCGAAGCGCTGAAGGGCAAGATCAAGAAGGCGCTGTTCTATCC
TGCCATGGTGGTGGTGGTTGCGTTGGTGGTCAGTGCCATCATGCTGATCTTCGTCGTACCACAGTTTGAGGAAGTGTTCC
GTGGTTTCGGCGCGGACCTGCCAGCATTCACCCAGATGATCGTCAATCTGTCACGCTTCATGGTTTCGTGGTGGTGGCTG
ATAGCGATCGTGGCGATTGGCGCCGTCGTTGCGTTCACCATGGCCTACAAACGATCACCCAACATGCAGCACACCATGGA
TCGGCTGATTCTGAGGGTGCCGGTGATCGGCCAGATCATGCATAACAGTTCGATCGCCCGCTTCGCCCGCACTACGGCGG
TGACCTTCAAGGCTGGCGTGCCACTGGTGGAGGCGCTGGGCATCGTTGCCGGCGCTACCGGCAACAAGGTCTATGAGGAA
GGCGTACTGCGGATGCGCGACGACGTGTCGGTCGGCTATCCGGTCAATGTAGCCATGAAGCAGCTGAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCCGGTGCCTTGGACGCCATGTTGTTCAAGGTTGCCGAGTATTATG
AGCAGGAGGTCAACAATGCCGTTGACGCCCTGAGCAGCCTGCTCGAACCGATGATCATGGTCTTCATCGGTGTCGTCGTT
GGCGGTATGGTCATCGGCATGTACCTGCCCATCTTCAAACTTGGCGCCGTCGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

52.475

96.42

0.506
  pilC Pseudomonas stutzeri DSM 10701

53.535

94.511

0.506
  pilC Acinetobacter baylyi ADP1

50.985

96.897

0.494
  pilC Acinetobacter baumannii D1279779

50.882

94.749

0.482
  pilG Neisseria gonorrhoeae MS11

44.25

95.465

0.422
  pilG Neisseria meningitidis 44/76-A

44

95.465

0.42
  pilC Vibrio campbellii strain DS40M4

41.397

95.704

0.396
  pilC Vibrio cholerae strain A1552

40.887

96.897

0.396

Multiple sequence alignment