Detailed information NTG0405701

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: GOC52_RS16145
• Genome accession: NZ_CP046588
• Coordinates: 3527193..3528566 (+)
• Length: 457 a.a.
• NCBI ID: WP_010481514.1
• Uniprot ID: -
• Organism: Stenotrophomonas sp. SXG-1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3522193..3533566

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GOC52_RS16130	sucD	3523048..3523923 (-)	876	WP_005410793.1	succinate--CoA ligase subunit alpha	-
GOC52_RS16135	sucC	3523944..3525113 (-)	1170	WP_004154430.1	ADP-forming succinate--CoA ligase subunit beta	-
GOC52_RS16140	-	3525519..3527132 (+)	1614	WP_143993947.1	ATP-binding protein	-
GOC52_RS16145	pilR	3527193..3528566 (+)	1374	WP_010481514.1	sigma-54 dependent transcriptional regulator	Regulator
GOC52_RS16150	pilB	3528752..3530485 (-)	1734	WP_191849881.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GOC52_RS16155	-	3530551..3530970 (-)	420	WP_049425142.1	pilin	-
GOC52_RS16160	-	3531079..3531540 (-)	462	WP_191849882.1	pilin	-
GOC52_RS16165	pilC	3531900..3533159 (+)	1260	WP_191849884.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49465.77 Da
• Isoelectric Point: 6.5844

>NTDB_id=405701 GOC52_RS16145 WP_010481514.1 3527193..3528566(+) (pilR) [Stenotrophomonas sp. SXG-1]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNTERPAPGPATEQAARLLGASPAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAHYAFPGNVRELENILERALALAEEDRIGADDLRLPQHAPRAPGGAAPAEAV
ADLQPGGAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=405701 GOC52_RS16145 WP_010481514.1 3527193..3528566(+) (pilR) [Stenotrophomonas sp. SXG-1]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGATGAACGCGACATCCGCGAACTGCTGGTACTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACCGCCGCCAACCTGGCCGAAGCACGCGAGCTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTACCGGATGGCAACGGCATTGAGCTGGTCAGCGAAATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGTGGCCTGGTCAAGCACGCACTGGAACTCAACAACACCGAACGCCCTGCGCCCGGCCCCGCCA
CCGAACAGGCTGCACGCCTGCTGGGCGCTTCGCCGGCCATGGACGTGTTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCACCGGTCTACATCCTCGGTGAATCCGGGGTTGGCAAGGAACTGGTCGCTCGCACCATCCACGCCCAAGGCGCGCG
TGCGGCCGGCCCGTTCGTGCCGGTTAACTGCGGCGCCATTCCCGGCGAGCTGATGGAAAGCGAATTCTTTGGCCACCGCA
AAGGCAGCTTCAGCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCGGCGCACGGCGGCACCCTGTTCCTGGACGAA
GTGGCCGAGCTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAGAAGTCGGTGCGCGCGGTCGGTGCTGC
CAACGAAGAGCCGGTGGACGTACGCATCCTCTCTGCCACCCACAAGGACCTGGCCGAGCTGGTCGAAGACGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAACTGAAGGTGCCGCCGCTGCGCGAGCGCCGCCAGGACCTGCCGGAA
CTGGCGGCCGCCGTACTGGCGCGGCTAGCCCGCAGCCACGGCCGTGCCACCCCGCTGCTGGCCCCGTCGGCGCTGGAGGC
GCTGGCCCACTATGCGTTCCCGGGCAATGTGCGCGAGCTGGAGAACATTCTGGAACGCGCGCTGGCACTGGCTGAGGAAG
ACCGCATCGGTGCCGACGACCTGCGCCTGCCGCAGCACGCCCCGCGTGCGCCCGGCGGCGCAGCTCCCGCCGAAGCCGTG
GCCGACCTGCAGCCGGGCGGCGCCGCCCTGCCCTCGTACATCGAGCAACTGGAACGCAGCGCCATCCAGCGCGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGGACCGCCGCGCAGCTGGGCATCACCTTCCGCGCGCTGCGCTACAAGCTGAAGAAGC
TGGGAATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Sigma-54 interaction domain (Sigma54_activat) (141-306)

• Response regulator receiver domain (Response_reg) (8-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.5	99.781	0.624
pilR	Acinetobacter baumannii strain A118	47.732	100	0.484