Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | XaFJ1_RS03025 | Genome accession | NZ_CP046570 |
| Coordinates | 667833..669104 (-) | Length | 423 a.a. |
| NCBI ID | WP_012915193.1 | Uniprot ID | D2UBN2 |
| Organism | Xanthomonas albilineans strain Xa-FJ1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 662833..674104
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XaFJ1_RS03005 (XaFJ1_GM000629) | - | 663771..664448 (+) | 678 | WP_045728928.1 | response regulator transcription factor | - |
| XaFJ1_RS03010 (XaFJ1_GM000630) | - | 664944..666254 (+) | 1311 | WP_012915190.1 | HAMP domain-containing sensor histidine kinase | - |
| XaFJ1_RS03015 (XaFJ1_GM000631) | coaE | 666327..666950 (-) | 624 | WP_012915191.1 | dephospho-CoA kinase | - |
| XaFJ1_RS03020 (XaFJ1_GM000632) | - | 666963..667826 (-) | 864 | WP_012915192.1 | A24 family peptidase | - |
| XaFJ1_RS03025 (XaFJ1_GM000633) | pilC | 667833..669104 (-) | 1272 | WP_012915193.1 | type II secretion system F family protein | Machinery gene |
| XaFJ1_RS03030 (XaFJ1_GM000634) | - | 669470..669907 (+) | 438 | WP_012915194.1 | pilin | - |
| XaFJ1_RS03035 (XaFJ1_GM000635) | pilB | 670057..671784 (+) | 1728 | WP_012915195.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| XaFJ1_RS03040 (XaFJ1_GM000636) | pilR | 671928..673316 (-) | 1389 | WP_012915196.1 | sigma-54 dependent transcriptional regulator | Regulator |
Sequence
Protein
Download Length: 423 a.a. Molecular weight: 46262.73 Da Isoelectric Point: 10.2315
>NTDB_id=405609 XaFJ1_RS03025 WP_012915193.1 667833..669104(-) (pilC) [Xanthomonas albilineans strain Xa-FJ1]
MSATRSAVKSAVKKEPVARATSQQIQFVWEGTDKRGVKMKGEQTAKNANLLRAELRRQGITPTVVKPKPKPLFGAAGSKV
TPKDIAFFSRQMATMMKSGVPIVGSLEIIASGHKNPRMKKMVEQIRTDIEGGSSLYEAISRHPVQFDELYRNLVKAGEGA
GVLETVLETVATYKENIEALKGKIKKALFYPAMVMAVAVIVSCILLVWVVPQFEDVFKGFGAQLPAFTQMIVTASRFMVA
YWWMMLIVVIGSIVGFTFAYKRSPAMQHGMDRLILKVPVIGQIMHNSSVARFSRTLAVTFRAGVPLVEALDIVAGATGNS
VYEKSVLRMRDDVAVGYPVNVAMKQTNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLMEPLIMVFI
GTIVGGMVIGMYLPIFKLASVVG
MSATRSAVKSAVKKEPVARATSQQIQFVWEGTDKRGVKMKGEQTAKNANLLRAELRRQGITPTVVKPKPKPLFGAAGSKV
TPKDIAFFSRQMATMMKSGVPIVGSLEIIASGHKNPRMKKMVEQIRTDIEGGSSLYEAISRHPVQFDELYRNLVKAGEGA
GVLETVLETVATYKENIEALKGKIKKALFYPAMVMAVAVIVSCILLVWVVPQFEDVFKGFGAQLPAFTQMIVTASRFMVA
YWWMMLIVVIGSIVGFTFAYKRSPAMQHGMDRLILKVPVIGQIMHNSSVARFSRTLAVTFRAGVPLVEALDIVAGATGNS
VYEKSVLRMRDDVAVGYPVNVAMKQTNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLMEPLIMVFI
GTIVGGMVIGMYLPIFKLASVVG
Nucleotide
Download Length: 1272 bp
>NTDB_id=405609 XaFJ1_RS03025 WP_012915193.1 667833..669104(-) (pilC) [Xanthomonas albilineans strain Xa-FJ1]
ATGTCCGCAACTCGCAGCGCAGTCAAGAGCGCAGTCAAAAAAGAACCGGTCGCGCGCGCTACCAGCCAACAAATTCAGTT
CGTCTGGGAGGGCACCGACAAACGCGGCGTCAAGATGAAGGGCGAGCAGACGGCCAAAAACGCCAACCTGCTGCGCGCGG
AACTGCGCCGCCAGGGCATCACCCCCACCGTGGTCAAGCCCAAGCCCAAGCCCTTGTTCGGCGCGGCGGGCAGCAAGGTC
ACCCCCAAGGACATCGCCTTCTTCAGCCGGCAAATGGCGACGATGATGAAGTCGGGCGTGCCCATCGTGGGGTCGCTGGA
GATCATCGCCAGCGGGCACAAGAACCCGCGCATGAAAAAGATGGTCGAGCAGATCCGCACCGATATCGAGGGCGGCTCCT
CGCTCTACGAAGCGATCAGCCGGCATCCGGTGCAGTTCGACGAGTTGTACCGCAATCTGGTCAAGGCCGGCGAAGGCGCT
GGCGTTCTCGAAACCGTGCTGGAAACGGTGGCCACCTACAAGGAAAACATCGAAGCGCTTAAAGGCAAGATCAAGAAGGC
CTTGTTCTATCCGGCCATGGTGATGGCCGTCGCAGTGATCGTCAGCTGCATCCTGCTGGTCTGGGTGGTGCCGCAGTTCG
AGGACGTGTTCAAGGGCTTCGGCGCGCAACTGCCGGCCTTCACCCAGATGATCGTGACGGCCTCGCGCTTCATGGTCGCG
TATTGGTGGATGATGCTGATCGTGGTGATCGGCAGCATCGTGGGCTTCACCTTCGCCTACAAGCGCTCGCCAGCCATGCA
GCATGGCATGGACCGGCTGATCCTGAAGGTGCCGGTCATCGGCCAGATCATGCACAACAGTTCGGTGGCGCGCTTCTCGC
GCACCCTGGCGGTGACCTTCCGCGCCGGCGTGCCGTTGGTGGAAGCGCTGGACATCGTCGCTGGCGCCACCGGCAACAGC
GTCTACGAAAAATCCGTCTTGCGCATGCGCGACGACGTGGCGGTCGGCTACCCGGTGAACGTGGCGATGAAGCAGACCAA
TCTGTTTCCGCACATGGTGATCCAGATGACCGCCATCGGCGAGGAGGCCGGCGCGCTGGACGCGATGCTGTTCAAGGTGG
CCGAGTATTTCGAACAGGAAGTCAACAACGCGGTCGATGCCTTGAGCAGCCTGATGGAACCGCTGATCATGGTGTTCATC
GGCACCATCGTCGGCGGCATGGTCATCGGCATGTATCTACCGATCTTCAAGCTGGCCTCGGTGGTGGGATAA
ATGTCCGCAACTCGCAGCGCAGTCAAGAGCGCAGTCAAAAAAGAACCGGTCGCGCGCGCTACCAGCCAACAAATTCAGTT
CGTCTGGGAGGGCACCGACAAACGCGGCGTCAAGATGAAGGGCGAGCAGACGGCCAAAAACGCCAACCTGCTGCGCGCGG
AACTGCGCCGCCAGGGCATCACCCCCACCGTGGTCAAGCCCAAGCCCAAGCCCTTGTTCGGCGCGGCGGGCAGCAAGGTC
ACCCCCAAGGACATCGCCTTCTTCAGCCGGCAAATGGCGACGATGATGAAGTCGGGCGTGCCCATCGTGGGGTCGCTGGA
GATCATCGCCAGCGGGCACAAGAACCCGCGCATGAAAAAGATGGTCGAGCAGATCCGCACCGATATCGAGGGCGGCTCCT
CGCTCTACGAAGCGATCAGCCGGCATCCGGTGCAGTTCGACGAGTTGTACCGCAATCTGGTCAAGGCCGGCGAAGGCGCT
GGCGTTCTCGAAACCGTGCTGGAAACGGTGGCCACCTACAAGGAAAACATCGAAGCGCTTAAAGGCAAGATCAAGAAGGC
CTTGTTCTATCCGGCCATGGTGATGGCCGTCGCAGTGATCGTCAGCTGCATCCTGCTGGTCTGGGTGGTGCCGCAGTTCG
AGGACGTGTTCAAGGGCTTCGGCGCGCAACTGCCGGCCTTCACCCAGATGATCGTGACGGCCTCGCGCTTCATGGTCGCG
TATTGGTGGATGATGCTGATCGTGGTGATCGGCAGCATCGTGGGCTTCACCTTCGCCTACAAGCGCTCGCCAGCCATGCA
GCATGGCATGGACCGGCTGATCCTGAAGGTGCCGGTCATCGGCCAGATCATGCACAACAGTTCGGTGGCGCGCTTCTCGC
GCACCCTGGCGGTGACCTTCCGCGCCGGCGTGCCGTTGGTGGAAGCGCTGGACATCGTCGCTGGCGCCACCGGCAACAGC
GTCTACGAAAAATCCGTCTTGCGCATGCGCGACGACGTGGCGGTCGGCTACCCGGTGAACGTGGCGATGAAGCAGACCAA
TCTGTTTCCGCACATGGTGATCCAGATGACCGCCATCGGCGAGGAGGCCGGCGCGCTGGACGCGATGCTGTTCAAGGTGG
CCGAGTATTTCGAACAGGAAGTCAACAACGCGGTCGATGCCTTGAGCAGCCTGATGGAACCGCTGATCATGGTGTTCATC
GGCACCATCGTCGGCGGCATGGTCATCGGCATGTATCTACCGATCTTCAAGCTGGCCTCGGTGGTGGGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
53.03 |
93.617 |
0.496 |
| pilC | Acinetobacter baumannii D1279779 |
52.645 |
93.853 |
0.494 |
| pilC | Legionella pneumophila strain ERS1305867 |
52.261 |
94.09 |
0.492 |
| pilC | Acinetobacter baylyi ADP1 |
51.385 |
93.853 |
0.482 |
| pilG | Neisseria gonorrhoeae MS11 |
43.069 |
95.508 |
0.411 |
| pilG | Neisseria meningitidis 44/76-A |
42.574 |
95.508 |
0.407 |
| pilC | Vibrio cholerae strain A1552 |
42.211 |
94.09 |
0.397 |
| pilC | Vibrio campbellii strain DS40M4 |
39.152 |
94.799 |
0.371 |