Detailed information NTG0405611

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: XaFJ1_RS03040
• Genome accession: NZ_CP046570
• Coordinates: 671928..673316 (-)
• Length: 462 a.a.
• NCBI ID: WP_012915196.1
• Uniprot ID: D2UBN5
• Organism: Xanthomonas albilineans strain Xa-FJ1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 666928..678316

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
XaFJ1_RS03020 (XaFJ1_GM000632)	-	666963..667826 (-)	864	WP_012915192.1	A24 family peptidase	-
XaFJ1_RS03025 (XaFJ1_GM000633)	pilC	667833..669104 (-)	1272	WP_012915193.1	type II secretion system F family protein	Machinery gene
XaFJ1_RS03030 (XaFJ1_GM000634)	-	669470..669907 (+)	438	WP_012915194.1	pilin	-
XaFJ1_RS03035 (XaFJ1_GM000635)	pilB	670057..671784 (+)	1728	WP_012915195.1	type IV-A pilus assembly ATPase PilB	Machinery gene
XaFJ1_RS03040 (XaFJ1_GM000636)	pilR	671928..673316 (-)	1389	WP_012915196.1	sigma-54 dependent transcriptional regulator	Regulator
XaFJ1_RS03045 (XaFJ1_GM000637)	-	673404..675017 (-)	1614	WP_012915197.1	ATP-binding protein	-
XaFJ1_RS03050 (XaFJ1_GM000638)	sucC	675308..676471 (+)	1164	WP_012915198.1	ADP-forming succinate--CoA ligase subunit beta	-
XaFJ1_RS03055 (XaFJ1_GM000639)	sucD	676498..677370 (+)	873	WP_012915199.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 49909.41 Da
• Isoelectric Point: 6.5107

>NTDB_id=405611 XaFJ1_RS03040 WP_012915196.1 671928..673316(-) (pilR) [Xanthomonas albilineans strain Xa-FJ1]
MNETRSALIVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNRYDLCITDMRLPDGNGIELVSEIAKHYPHTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIQILRGLVKHALELNNATRAAAPIPAPEHASRLLGASAAMEALRNTIAKVAR
NQAPVYILGESGVGKELVARTIHEQSARAVGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLPMQVKLLRAIQEKSVRPVGAATEVPVDVRILSATHKDLADLVAEGRFRHDLYYRINVIELRVPPLRERASDLP
HLAAAILLRLAKSHDRPAPLLSSSALDALSGYAFPGNVRELENILERALAMADDDQIDAADLRLPQPGNSARAAAEAAPA
LPPGVVDIDPGSSALPTYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1389 bp

>NTDB_id=405611 XaFJ1_RS03040 WP_012915196.1 671928..673316(-) (pilR) [Xanthomonas albilineans strain Xa-FJ1]
ATGAACGAAACCCGAAGCGCCCTGATCGTCGACGACGAGCGCGACATCCGCGAGTTACTGGTCCTGACCCTGGGCAGGAT
GGGCCTGCGCATCAGCACCGCCGCCAATTTGGCCGAAGCGCGCGAATTGCTGGCGAGCAATCGCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATTGCCAAGCACTATCCGCACACACCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGATCTGGCGGTGGAGGCGCTGAAGGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
CGACATCCAGATTCTGCGCGGCCTGGTCAAGCACGCGCTGGAACTCAACAACGCAACGCGTGCCGCCGCGCCAATCCCGG
CGCCGGAACATGCCAGCCGCCTGCTCGGCGCATCGGCGGCGATGGAGGCGCTGCGCAACACCATCGCCAAGGTGGCACGC
AACCAAGCGCCGGTCTATATCCTCGGCGAATCGGGCGTGGGCAAGGAACTGGTCGCCCGCACCATCCACGAACAGAGCGC
GCGCGCGGTCGGACCGTTCGTCCCGGTGAACTGCGGCGCGATCCCCGCCGAACTGATGGAAAGCGAGTTCTTCGGGCATA
AGAAAGGCAGCTTCACCGGCGCGCATGCTGATCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGTACCTTGTTCCTCGAC
GAAGTCGCCGAACTGCCGTTGCCGATGCAGGTCAAGTTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CGCCACGGAAGTGCCGGTGGACGTGCGTATTCTCTCGGCAACCCACAAGGACCTGGCCGACCTGGTCGCCGAGGGCCGCT
TCCGCCACGACCTGTATTACCGCATCAACGTGATCGAACTACGCGTGCCGCCGCTGCGCGAACGTGCCAGCGACCTGCCG
CACCTGGCCGCGGCGATTCTGTTGCGGCTGGCCAAGAGCCACGACCGGCCGGCCCCGTTGCTCTCGTCCTCCGCACTGGA
CGCGCTGAGCGGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAACGCGCCCTGGCGATGGCCGACG
ACGACCAGATCGATGCCGCGGATCTACGCCTCCCGCAACCCGGCAACAGCGCCCGGGCGGCGGCCGAGGCCGCCCCGGCG
CTGCCGCCCGGCGTGGTCGACATCGATCCCGGTTCCTCGGCGCTGCCCACCTATATCGAGCAGCTCGAACGCGCGGCGAT
CCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCCGTACCGCCGCGCAGCTCGGCATCACCTTCCGCGCCCTGCGCT
ACAAACTGAAAAAGCTGGGTATGGAATAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-114)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Bacterial regulatory protein, Fis family (HTH_8) (419-459)

3D structure

• AlphaFold DB: D2UBN5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.745	99.351	0.623
pilR	Acinetobacter baumannii strain A118	47.21	100	0.476