Detailed information NTG0404913

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: GOM48_RS03225
• Genome accession: NZ_CP046523
• Coordinates: 649515..649985 (+)
• Length: 156 a.a.
• NCBI ID: WP_000609594.1
• Uniprot ID: A0A4V0BWD1
• Organism: Streptococcus oralis strain SOD
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 644515..654985

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GOM48_RS03200 (GOM48_03180)	-	644829..646010 (+)	1182	WP_235098345.1	pyridoxal phosphate-dependent aminotransferase	-
GOM48_RS03205 (GOM48_03185)	-	646010..646381 (+)	372	WP_132973876.1	VOC family protein	-
GOM48_RS03210 (GOM48_03190)	asnS	646395..647738 (+)	1344	WP_000167131.1	asparagine--tRNA ligase	-
GOM48_RS03215 (GOM48_03195)	-	647872..649080 (+)	1209	WP_084926080.1	MFS transporter	-
GOM48_RS03220 (GOM48_03200)	rpsF	649213..649503 (+)	291	WP_001151782.1	30S ribosomal protein S6	-
GOM48_RS03225 (GOM48_03205)	ssbA	649515..649985 (+)	471	WP_000609594.1	single-stranded DNA-binding protein SsbA	Machinery gene
GOM48_RS03230 (GOM48_03210)	rpsR	650017..650256 (+)	240	WP_000068664.1	30S ribosomal protein S18	-
GOM48_RS03235 (GOM48_03215)	-	650482..650991 (+)	510	WP_084948899.1	GNAT family N-acetyltransferase	-
GOM48_RS03240 (GOM48_03220)	-	651073..652473 (+)	1401	WP_235098346.1	bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase	-
GOM48_RS03245 (GOM48_03225)	-	652475..652834 (+)	360	WP_000689619.1	S1 RNA-binding domain-containing protein	-
GOM48_RS03250 (GOM48_03230)	-	652888..653637 (+)	750	WP_235098348.1	tRNA1(Val) (adenine(37)-N6)-methyltransferase	-
GOM48_RS03255 (GOM48_03235)	-	653627..653911 (+)	285	WP_235098350.1	GIY-YIG nuclease family protein	-
GOM48_RS03260 (GOM48_03240)	-	653997..654932 (+)	936	WP_235098352.1	manganese-dependent inorganic pyrophosphatase	-

Sequence

Protein

• Length: 156 a.a.
• Molecular weight: 17353.23 Da
• Isoelectric Point: 4.9057

>NTDB_id=404913 GOM48_RS03225 WP_000609594.1 649515..649985(+) (ssbA) [Streptococcus oralis strain SOD]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGITGRIQTR
SYDNQQGQRVYVTEVVADNFQMLESRSVREGHTGGAYSAPTASYTAPTQSVPDFSRDENPFGATNPLDISDDDLPF

Nucleotide

• Length: 471 bp

>NTDB_id=404913 GOM48_RS03225 WP_000609594.1 649515..649985(+) (ssbA) [Streptococcus oralis strain SOD]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTCAAGAGTCAAAATGGCGAACGTGAGGCTGATTTCATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCTCTTATCGGGATCACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTAACAGAAGTCGTGGCTGATAATTTCCAAATGTTGGAAAGCCGTAG
CGTGCGTGAAGGACATACAGGTGGAGCTTATTCTGCACCAACTGCTAGTTATACAGCACCTACACAATCAGTACCTGACT
TTTCACGTGATGAAAATCCATTTGGAGCAACCAATCCGTTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

3D structure

• AlphaFold DB: A0A4V0BWD1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	54.07	100	0.596
ssb	Latilactobacillus sakei subsp. sakei 23K	54.706	100	0.596
ssbB	Bacillus subtilis subsp. subtilis str. 168	55.66	67.949	0.378
ssbB/cilA	Streptococcus pneumoniae TIGR4	50.427	75	0.378
ssbB	Streptococcus sobrinus strain NIDR 6715-7	54.128	69.872	0.378
ssbB/cilA	Streptococcus mitis SK321	49.573	75	0.372
ssbB/cilA	Streptococcus mitis NCTC 12261	49.573	75	0.372
ssbB/cilA	Streptococcus pneumoniae Rx1	49.573	75	0.372
ssbB/cilA	Streptococcus pneumoniae D39	49.573	75	0.372
ssbB/cilA	Streptococcus pneumoniae R6	49.573	75	0.372