Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   CAR_RS03445 Genome accession   NC_015391
Coordinates   699195..700457 (+) Length   420 a.a.
NCBI ID   WP_013710320.1    Uniprot ID   F4BNF3
Organism   Carnobacterium sp. 17-4     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 694195..705457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAR_RS03425 (CAR_c06800) - 695350..696651 (+) 1302 WP_013710316.1 pitrilysin family protein -
  CAR_RS03430 (CAR_c06810) - 696648..697373 (+) 726 WP_041556135.1 SDR family oxidoreductase -
  CAR_RS03435 (CAR_c06820) - 697480..698343 (+) 864 WP_013710318.1 helix-turn-helix domain-containing protein -
  CAR_RS03440 (CAR_c06830) pgsA 698434..699015 (+) 582 WP_041556136.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CAR_RS03445 (CAR_c06840) cinA 699195..700457 (+) 1263 WP_013710320.1 competence/damage-inducible protein A Machinery gene
  CAR_RS03450 (CAR_c06850) recA 700613..701656 (+) 1044 WP_013710321.1 recombinase RecA Machinery gene
  CAR_RS03455 (CAR_c06860) rny 701963..703522 (+) 1560 WP_013710322.1 ribonuclease Y -
  CAR_RS03460 (CAR_c06870) - 703707..704513 (+) 807 WP_013710323.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46203.14 Da        Isoelectric Point: 5.1216

>NTDB_id=40360 CAR_RS03445 WP_013710320.1 699195..700457(+) (cinA) [Carnobacterium sp. 17-4]
MNAEIIAVGTELLMGQVVNTNASFLSRELSLLGLDVYHQVVVGDNPKRLLEAIQVAEQRSDLVILSGGLGPTKDDITKQV
LAEHLNKKLILDMSTMEKISSYFKNSKRVMTENNRLQAMVIEGSTVLKNETGLAAGMFLKQDKQAFLLLPGPPSELEPMF
IKEVRPLLMDGRPNENHLVSRILRFFGIGESQLAAELDDLIEEQKNPTLATYAGKHEVTLRLTANGTTEEACQLLLDKME
AIIQQRIGGYFYGYGEDRRLVNVVTDLLNEQNLTLTAAESLTGGAFQNLITSVSGASNYFKGGIVTYSNEAKTTILGVAK
RSIEEFGVVSAECAIEMAKKAQGMFDTDLAISFTGVAGPDKLDNKEVGTVWIGIATKETTFAKEYHFGKGRENNREKSIM
SGLELIRRVLLNLPIEQKVL

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=40360 CAR_RS03445 WP_013710320.1 699195..700457(+) (cinA) [Carnobacterium sp. 17-4]
ATGAACGCTGAAATCATAGCAGTTGGAACAGAACTTTTAATGGGACAAGTAGTAAACACCAATGCTTCTTTTCTCTCTCG
CGAACTATCGTTATTAGGGTTAGATGTTTATCACCAAGTAGTGGTTGGAGATAATCCGAAACGATTATTAGAAGCAATAC
AAGTGGCAGAACAAAGAAGTGATCTAGTTATCCTTTCAGGTGGTCTTGGACCTACGAAAGATGACATTACAAAACAAGTA
TTAGCTGAACATTTAAATAAAAAACTAATTTTAGATATGAGTACTATGGAAAAAATAAGTAGCTATTTTAAAAATAGCAA
ACGAGTAATGACAGAAAACAATCGATTACAAGCTATGGTAATTGAAGGGTCTACTGTTTTAAAAAATGAAACAGGACTTG
CAGCAGGAATGTTTTTAAAACAAGACAAACAAGCTTTTTTATTATTACCAGGCCCACCTAGCGAGTTAGAACCCATGTTT
ATAAAAGAAGTAAGGCCATTATTAATGGACGGGCGTCCAAATGAAAACCACCTTGTATCAAGAATTTTACGTTTCTTTGG
TATTGGAGAATCTCAATTAGCTGCTGAATTAGATGATTTGATTGAAGAGCAAAAAAATCCTACTCTTGCAACGTATGCTG
GAAAGCATGAAGTAACCTTGCGTTTAACAGCAAACGGAACCACTGAGGAAGCATGTCAATTATTATTGGATAAGATGGAA
GCTATCATCCAGCAACGCATAGGTGGCTATTTTTATGGGTATGGAGAGGATAGACGATTAGTAAATGTAGTTACAGATTT
ATTAAATGAACAAAATCTGACACTTACAGCAGCTGAGAGCTTGACTGGTGGTGCTTTTCAAAACCTTATAACAAGTGTTT
CAGGTGCAAGTAACTATTTCAAAGGTGGAATCGTAACTTATAGTAATGAAGCAAAAACAACTATTTTAGGTGTTGCAAAA
AGATCAATTGAAGAGTTTGGTGTAGTCAGTGCTGAGTGTGCAATAGAAATGGCAAAAAAAGCACAAGGAATGTTTGATAC
AGATTTGGCTATCTCATTTACAGGGGTTGCAGGTCCAGATAAGTTGGATAATAAAGAAGTAGGAACCGTATGGATTGGTA
TTGCTACTAAAGAAACAACATTTGCTAAAGAATACCATTTTGGTAAAGGGCGTGAAAATAATCGAGAAAAATCGATTATG
TCTGGATTAGAATTGATTCGAAGAGTGTTACTAAATTTGCCTATAGAACAAAAAGTTTTGTGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F4BNF3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

47.981

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.743

100

0.479
  cinA Bacillus subtilis subsp. subtilis str. 168

49.02

97.143

0.476
  cinA Streptococcus mitis NCTC 12261

47.268

100

0.474
  cinA Streptococcus pneumoniae Rx1

47.268

100

0.474
  cinA Streptococcus pneumoniae R6

47.268

100

0.474
  cinA Streptococcus pneumoniae D39

47.031

100

0.471
  cinA Streptococcus mutans UA159

47.356

99.048

0.469
  cinA Streptococcus suis isolate S10

40.097

98.571

0.395

Multiple sequence alignment