Detailed information NTG0402690

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HUZ70_RS20575
• Genome accession: NZ_CP055048
• Coordinates: 4315083..4316075 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SWHEFF_58
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4310083..4321075

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUZ70_RS20545 (HUZ70_20380)	ispD	4310144..4310854 (+)	711	WP_000246131.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HUZ70_RS20550 (HUZ70_20385)	ispF	4310854..4311333 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HUZ70_RS20555 (HUZ70_20390)	truD	4311330..4312379 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
HUZ70_RS20560 (HUZ70_20395)	surE	4312360..4313121 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HUZ70_RS20565 (HUZ70_20400)	pcm	4313115..4313741 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HUZ70_RS20570 (HUZ70_20405)	nlpD	4313926..4315020 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HUZ70_RS20575 (HUZ70_20410)	rpoS	4315083..4316075 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HUZ70_RS20580 (HUZ70_20415)	-	4316196..4316603 (-)	408	WP_001208066.1	MarR family transcriptional regulator	-
HUZ70_RS20585 (HUZ70_20420)	-	4316750..4317343 (+)	594	WP_001237173.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
HUZ70_RS20590 (HUZ70_20425)	-	4317343..4318770 (+)	1428	WP_001551547.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
HUZ70_RS20595 (HUZ70_20430)	-	4318781..4319017 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
HUZ70_RS20600 (HUZ70_20435)	ygbN	4319056..4320420 (-)	1365	WP_000104457.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=402690 HUZ70_RS20575 WP_000081550.1 4315083..4316075(+) (rpoS) [Escherichia coli strain SWHEFF_58]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=402690 HUZ70_RS20575 WP_000081550.1 4315083..4316075(+) (rpoS) [Escherichia coli strain SWHEFF_58]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715