Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   FOC36_RS11465 Genome accession   NZ_CP046307
Coordinates   2422373..2423611 (+) Length   412 a.a.
NCBI ID   WP_003128983.1    Uniprot ID   A0A1V8Z0L9
Organism   Enterococcus gallinarum strain FDAARGOS_728     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2417373..2428611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC36_RS11445 (FOC36_11445) yfmF 2417801..2419069 (+) 1269 WP_005473050.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  FOC36_RS11450 (FOC36_11450) yfmH 2419062..2420360 (+) 1299 WP_003128977.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  FOC36_RS11455 (FOC36_11455) - 2420693..2421598 (+) 906 WP_003128979.1 helix-turn-helix domain-containing protein -
  FOC36_RS11460 (FOC36_11460) pgsA 2421710..2422291 (+) 582 WP_005473048.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FOC36_RS11465 (FOC36_11465) cinA 2422373..2423611 (+) 1239 WP_003128983.1 competence/damage-inducible protein A Machinery gene
  FOC36_RS11470 (FOC36_11470) recA 2423715..2424761 (+) 1047 WP_003128984.1 recombinase RecA Machinery gene
  FOC36_RS11475 (FOC36_11475) - 2424927..2426117 (-) 1191 WP_155853267.1 IS256-like element ISLgar5 family transposase -
  FOC36_RS11480 (FOC36_11480) rny 2426357..2427931 (+) 1575 WP_029487351.1 ribonuclease Y -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45131.39 Da        Isoelectric Point: 4.8009

>NTDB_id=402517 FOC36_RS11465 WP_003128983.1 2422373..2423611(+) (cinA) [Enterococcus gallinarum strain FDAARGOS_728]
MKAEIIAVGTELLLGQVVNTNATFLSEELASLGIEVYYHSVVGDNPKRLEELVTLAENRSDLIVFCGGLGPTEDDLTKQI
VAQHVGQELVRDEAGYEQMLTFFKNGQRFMTENNLRQTLVFKDGTALPNATGLAIGIFYRTATAAYLLLPGPPSELKPMF
IQQARPILQTEFSSEEQLISRVLRFYGIGESALVTELADLIDSQKNPTVAPYAKPNEVTLRLTVKTTDESAGQAKLDELE
QQIQARVGEYFYGYGEHTSLAEVVVDMLKEKKKTVTAAESLTAGLFQATLGDISGVSRVFSGGYVTYAKETKSKMLGINE
DLLTAYGTVSKECAEAMALAAQAKEKADYALSFTGVAGPDELENQRPGTVWIALATNEGVKSKCYHFSRDRAYVRHSAVM
AGLDLLRKELLR

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=402517 FOC36_RS11465 WP_003128983.1 2422373..2423611(+) (cinA) [Enterococcus gallinarum strain FDAARGOS_728]
ATGAAGGCAGAGATTATTGCAGTAGGGACCGAATTGCTTTTGGGACAGGTGGTGAATACCAATGCAACTTTCTTATCAGA
AGAATTAGCTAGTTTAGGAATCGAAGTTTACTATCATAGTGTTGTAGGGGACAATCCAAAGCGTTTGGAAGAGCTAGTAA
CACTTGCCGAGAATCGCAGTGACTTGATCGTATTTTGCGGTGGTCTCGGACCTACAGAAGATGATTTAACCAAACAAATC
GTTGCACAGCATGTCGGTCAAGAGCTCGTTCGTGACGAAGCAGGGTATGAGCAAATGCTGACCTTTTTCAAAAATGGTCA
GCGTTTTATGACAGAAAATAATTTGAGGCAGACGTTGGTATTCAAAGATGGTACAGCGTTACCTAATGCAACTGGATTAG
CAATCGGTATCTTCTACCGAACAGCTACAGCGGCATATCTCCTGTTGCCTGGACCACCAAGTGAACTGAAACCTATGTTT
ATCCAACAAGCCCGTCCAATTTTGCAGACAGAGTTTTCATCAGAAGAACAGTTGATTTCTCGAGTATTGCGATTTTATGG
AATTGGAGAATCCGCACTAGTAACTGAACTTGCCGATCTAATTGATTCTCAGAAGAACCCAACGGTCGCACCGTATGCTA
AACCCAATGAAGTAACCTTGCGTTTGACGGTGAAAACTACGGATGAATCGGCAGGACAAGCCAAACTAGATGAATTAGAA
CAACAAATCCAAGCAAGAGTGGGCGAATATTTTTATGGATATGGAGAGCATACTTCATTAGCTGAAGTAGTCGTTGATAT
GTTGAAAGAAAAGAAAAAAACCGTGACGGCTGCGGAGAGTTTGACAGCGGGACTCTTTCAAGCGACGCTGGGAGACATCT
CAGGCGTGTCCCGTGTATTTTCTGGTGGTTATGTGACTTATGCTAAAGAGACAAAAAGTAAGATGCTAGGAATCAATGAA
GACTTGCTAACAGCTTATGGAACTGTCAGCAAGGAATGTGCAGAAGCGATGGCGCTTGCTGCCCAAGCCAAAGAAAAAGC
GGATTACGCCCTTTCTTTTACCGGGGTAGCTGGACCAGATGAGCTTGAGAATCAACGCCCAGGAACGGTCTGGATTGCTT
TAGCAACCAATGAAGGTGTGAAAAGCAAGTGCTATCATTTTTCCAGAGATCGTGCATACGTTCGTCATAGTGCAGTAATG
GCAGGATTAGATCTATTACGTAAGGAATTGTTAAGATGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V8Z0L9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

52.619

100

0.536
  cinA Streptococcus mitis NCTC 12261

52.143

100

0.532
  cinA Streptococcus pneumoniae TIGR4

52.143

100

0.532
  cinA Streptococcus pneumoniae D39

51.905

100

0.529
  cinA Streptococcus pneumoniae Rx1

51.905

100

0.529
  cinA Streptococcus pneumoniae R6

51.905

100

0.529
  cinA Streptococcus mutans UA159

51.084

100

0.515
  cinA Bacillus subtilis subsp. subtilis str. 168

47.188

99.272

0.468
  cinA Streptococcus suis isolate S10

42.995

100

0.432

Multiple sequence alignment