Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   SOR_RS09705 Genome accession   NC_015291
Coordinates   1956466..1957662 (+) Length   398 a.a.
NCBI ID   WP_000681803.1    Uniprot ID   -
Organism   Streptococcus oralis Uo5     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1951466..1962662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS09665 (SOR_1981) - 1952526..1953068 (+) 543 WP_000665079.1 TetR/AcrR family transcriptional regulator -
  SOR_RS09680 (SOR_1984) comE 1953311..1954057 (-) 747 WP_000866078.1 competence system response regulator transcription factor ComE Regulator
  SOR_RS09685 (SOR_1985) comD 1954054..1955373 (-) 1320 WP_000362884.1 competence system sensor histidine kinase ComD Regulator
  SOR_RS09690 (SOR_1986) comC/comC2 1955394..1955519 (-) 126 WP_000799678.1 competence-stimulating peptide ComC Regulator
  SOR_RS09700 (SOR_1989) rlmH 1955801..1956280 (-) 480 WP_000694219.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SOR_RS09705 (SOR_1990) htrA 1956466..1957662 (+) 1197 WP_000681803.1 S1C family serine protease Regulator
  SOR_RS09710 (SOR_1991) spo0J 1957720..1958478 (+) 759 WP_000410359.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 398 a.a.        Molecular weight: 41985.76 Da        Isoelectric Point: 6.6581

>NTDB_id=40232 SOR_RS09705 WP_000681803.1 1956466..1957662(+) (htrA) [Streptococcus oralis Uo5]
MKHLQKFYKKGVKVLAIILIGFLSGALGSFVTLQLYQKQGNQATNNNSGTVTQTSYKNENSTTQAVNKVKDAVVSIITYS
SSSSRQSSVFNGDETNSDSDNQQIASEGSGVIYKKDDKDAYLVTNTHVINGASKVDIRLADGTKVPGEIVGSDTFSDIAV
VKISSEKVTTVAEFGDSSQLSVGETAIAIGSPLGSEYANTVTQGIISSLNRNVSLKSEDGQAISTKAIQTDTAINPGNSG
GPLVNIQGQVIGITSSKIASNGGTSVEGLGFAIPSNDAQNIIKQLESNGKVTRPALGIQMVNLSNVGASDLRKLNIPSSL
TSGVVVRSVQNNMPANGHLQKYDVITKVDDKEIASSTDLQHALYNHAIGDTIKVTYYRNGKEETTSIKLDKNSGDLES

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=40232 SOR_RS09705 WP_000681803.1 1956466..1957662(+) (htrA) [Streptococcus oralis Uo5]
ATGAAACACTTACAAAAATTTTACAAAAAAGGAGTTAAAGTTCTTGCAATCATTCTAATAGGATTTTTAAGTGGTGCCTT
AGGAAGTTTCGTAACATTACAACTTTATCAAAAACAAGGAAATCAAGCTACGAATAATAATTCTGGCACTGTCACTCAAA
CATCATATAAGAATGAAAATTCAACCACTCAAGCAGTAAATAAAGTTAAGGATGCTGTTGTCTCAATCATTACTTATTCT
TCTTCTAGCAGTAGACAAAGTAGTGTATTTAATGGTGATGAAACTAATTCTGATTCAGACAATCAACAAATCGCAAGTGA
GGGATCAGGTGTTATCTATAAAAAAGATGATAAAGATGCCTATCTTGTAACTAATACTCACGTTATCAATGGAGCTTCAA
AAGTTGATATTCGCTTGGCAGATGGTACCAAGGTTCCTGGTGAAATTGTCGGATCTGATACTTTCTCTGATATTGCTGTC
GTTAAAATTTCTTCAGAAAAAGTTACAACAGTAGCAGAATTTGGGGATTCAAGCCAACTTAGTGTTGGAGAAACAGCGAT
TGCTATTGGTAGTCCTCTAGGTTCAGAATATGCTAATACAGTTACACAGGGAATCATCTCAAGTCTTAATCGAAATGTTT
CTCTAAAATCTGAAGATGGTCAAGCTATTTCAACAAAAGCCATTCAAACAGATACGGCTATTAACCCTGGTAACTCTGGT
GGTCCACTTGTAAACATTCAAGGACAAGTAATTGGTATTACATCAAGTAAAATTGCAAGTAATGGTGGAACATCTGTAGA
AGGTCTTGGTTTTGCAATTCCTTCAAACGATGCACAAAATATCATTAAACAGCTTGAAAGTAATGGTAAAGTGACTCGTC
CAGCTCTTGGAATTCAAATGGTCAATCTGTCAAATGTTGGAGCTAGTGATCTTAGAAAACTTAACATTCCAAGTAGCCTC
ACTTCAGGTGTAGTTGTTCGATCTGTTCAAAACAATATGCCAGCAAATGGACATCTTCAAAAATACGATGTCATTACCAA
AGTTGACGACAAAGAGATTGCTTCATCAACAGACCTACAACACGCTCTTTACAATCATGCTATCGGAGATACTATCAAAG
TAACCTACTACCGTAATGGTAAGGAGGAAACAACCTCAATTAAACTAGATAAGAATTCTGGTGATTTAGAGTCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mitis NCTC 12261

83.668

100

0.837

  htrA Streptococcus pneumoniae Rx1

82.915

100

0.829

  htrA Streptococcus pneumoniae D39

82.915

100

0.829

  htrA Streptococcus pneumoniae R6

82.915

100

0.829

  htrA Streptococcus pneumoniae TIGR4

82.915

100

0.829

  htrA Streptococcus gordonii str. Challis substr. CH1

66.915

100

0.676

  htrA Streptococcus mutans UA159

54.822

98.995

0.543


Multiple sequence alignment