Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   SOR_RS08335 Genome accession   NC_015291
Coordinates   1678959..1680215 (-) Length   418 a.a.
NCBI ID   WP_000642679.1    Uniprot ID   F2QFD8
Organism   Streptococcus oralis Uo5     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1673959..1685215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS08310 (SOR_1701) - 1674303..1675019 (-) 717 WP_000532894.1 YebC/PmpR family DNA-binding transcriptional regulator -
  SOR_RS08315 (SOR_1702) - 1675223..1676593 (-) 1371 WP_013670281.1 MATE family efflux transporter -
  SOR_RS08320 (SOR_1703) - 1676703..1677257 (+) 555 WP_000060284.1 GNAT family N-acetyltransferase -
  SOR_RS08325 (SOR_1704) - 1677389..1677583 (-) 195 WP_000415531.1 PspC domain-containing protein -
  SOR_RS08330 (SOR_1705) recA 1677756..1678904 (-) 1149 WP_001085440.1 recombinase RecA Machinery gene
  SOR_RS08335 (SOR_1706) cinA 1678959..1680215 (-) 1257 WP_000642679.1 competence/damage-inducible protein A Machinery gene
  SOR_RS08340 (SOR_1707) brpA 1680288..1681328 (-) 1041 WP_000592174.1 biofilm formation/cell division transcriptional regulator BrpA -
  SOR_RS08345 (SOR_1708) - 1681333..1681854 (-) 522 WP_000455517.1 GNAT family N-acetyltransferase -
  SOR_RS08350 (SOR_1709) tsaE 1681844..1682287 (-) 444 WP_000556958.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SOR_RS08355 (SOR_1710) comM 1682371..1682994 (-) 624 WP_000240911.1 hypothetical protein Regulator
  SOR_RS08360 (SOR_1711) ndk 1683129..1683548 (-) 420 WP_000438308.1 nucleoside-diphosphate kinase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45208.58 Da        Isoelectric Point: 4.9883

>NTDB_id=40218 SOR_RS08335 WP_000642679.1 1678959..1680215(-) (cinA) [Streptococcus oralis Uo5]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLAEIGVDVYFQTAVGDNEARLLSLLEIASQRSNLVILTGGLGPTEDDLTKQT
LAKFLGKNLVFDPQAQEKLDIFFAHRPDYARTPNNERQAQIVEGATPLPNETGLAVGGVSEVDGVTYVVLPGPPSELKPM
VLNQLLPKLMTGTKLYSRVLRFFGIGESQLVTILADLIDHQTDPTLAPYAKTGEVTLRLSTKAVSQEKADQALDILENQI
LSRQTFEGISLRDICYGYGEETSLASVVVEELKKRQKSITAAESLTAGLFQATLADFSGVSAIFNGGFVTYSLEEKSKML
DISEQELKEHGVVSEFTARKMAEQARIKTQSDYGVSLTGVAGPDSLEGHPAGTVFIGLAHAKGTEVIKANIAGRSRADVR
HIAVMHAFYLVRKALLSD

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=40218 SOR_RS08335 WP_000642679.1 1678959..1680215(-) (cinA) [Streptococcus oralis Uo5]
ATGAAAGCAGAAATTATTGCTGTCGGAACAGAAATTTTAACAGGGCAGATTGTCAATACCAATGCTCAGTTTTTATCAGA
GAAACTTGCCGAAATCGGGGTAGATGTCTACTTCCAAACAGCTGTTGGAGATAATGAAGCTCGTCTTTTGTCCTTGCTGG
AGATTGCGAGTCAACGTAGCAATCTTGTGATTTTGACAGGGGGCTTGGGACCAACTGAGGATGATTTGACCAAACAAACT
CTGGCAAAATTTTTAGGAAAAAATCTAGTGTTTGACCCTCAAGCGCAAGAGAAACTGGATATCTTCTTTGCTCATAGACC
TGACTATGCTCGGACACCGAATAATGAGCGCCAAGCCCAAATTGTAGAAGGGGCGACTCCACTGCCAAATGAGACAGGTT
TAGCAGTAGGAGGGGTGTCGGAAGTGGATGGCGTAACCTACGTGGTCCTTCCAGGACCGCCGAGTGAGTTGAAACCTATG
GTCTTAAACCAACTCTTACCCAAGTTAATGACTGGTACCAAGTTATACTCACGTGTGCTCCGTTTCTTTGGAATTGGGGA
GAGTCAGTTGGTGACCATTTTGGCGGATTTGATTGACCATCAAACCGATCCGACTTTGGCGCCGTATGCCAAAACAGGAG
AAGTGACCTTGCGCTTGTCTACAAAAGCAGTTAGTCAAGAAAAGGCTGATCAAGCGCTGGATATCTTAGAAAATCAAATC
TTGAGTCGCCAAACTTTCGAGGGAATTTCTTTACGAGACATCTGTTACGGATATGGGGAAGAAACCAGCCTCGCAAGTGT
CGTTGTAGAAGAGCTAAAGAAGAGACAGAAAAGCATTACTGCGGCAGAAAGCTTGACGGCAGGTCTCTTTCAAGCGACAT
TAGCAGACTTTTCGGGCGTTTCAGCAATCTTTAATGGCGGTTTTGTCACTTACAGCCTAGAAGAAAAGTCCAAGATGTTG
GATATTTCCGAGCAAGAGCTAAAAGAACACGGGGTTGTTTCTGAGTTTACGGCTCGAAAAATGGCAGAGCAGGCACGGAT
CAAGACTCAGTCTGATTATGGAGTCAGTCTGACAGGTGTAGCTGGGCCAGATAGCCTAGAGGGTCATCCAGCTGGTACAG
TTTTTATTGGACTGGCACATGCAAAAGGGACAGAGGTTATCAAGGCTAATATCGCAGGACGGAGTCGAGCAGATGTCCGA
CATATTGCGGTCATGCATGCCTTTTACCTAGTTCGCAAGGCTTTATTAAGTGACTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(177-243)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(262-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F2QFD8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

89.952

100

0.9
  cinA Streptococcus pneumoniae TIGR4

89.474

100

0.895
  cinA Streptococcus pneumoniae Rx1

89.474

100

0.895
  cinA Streptococcus pneumoniae R6

89.474

100

0.895
  cinA Streptococcus mitis NCTC 12261

89.234

100

0.892
  cinA Streptococcus pneumoniae D39

89.234

100

0.892
  cinA Streptococcus mutans UA159

70.335

100

0.703
  cinA Streptococcus suis isolate S10

55.288

99.522

0.55
  cinA Bacillus subtilis subsp. subtilis str. 168

45.455

100

0.455

Multiple sequence alignment