Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Regulator
Locus tag   SOR_RS08355 Genome accession   NC_015291
Coordinates   1682371..1682994 (-) Length   207 a.a.
NCBI ID   WP_000240911.1    Uniprot ID   -
Organism   Streptococcus oralis Uo5     
Function   fratricide immunity (predicted from homology)   
Competence regulation

Genomic Context

Location: 1677371..1687994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS08325 (SOR_1704) - 1677389..1677583 (-) 195 WP_000415531.1 PspC domain-containing protein -
  SOR_RS08330 (SOR_1705) recA 1677756..1678904 (-) 1149 WP_001085440.1 recombinase RecA Machinery gene
  SOR_RS08335 (SOR_1706) cinA 1678959..1680215 (-) 1257 WP_000642679.1 competence/damage-inducible protein A Machinery gene
  SOR_RS08340 (SOR_1707) brpA 1680288..1681328 (-) 1041 WP_000592174.1 biofilm formation/cell division transcriptional regulator BrpA -
  SOR_RS08345 (SOR_1708) - 1681333..1681854 (-) 522 WP_000455517.1 GNAT family N-acetyltransferase -
  SOR_RS08350 (SOR_1709) tsaE 1681844..1682287 (-) 444 WP_000556958.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SOR_RS08355 (SOR_1710) comM 1682371..1682994 (-) 624 WP_000240911.1 hypothetical protein Regulator
  SOR_RS08360 (SOR_1711) ndk 1683129..1683548 (-) 420 WP_000438308.1 nucleoside-diphosphate kinase -
  SOR_RS08365 (SOR_1712) rpoC 1683659..1687324 (-) 3666 WP_000228784.1 DNA-directed RNA polymerase subunit beta' -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23670.63 Da        Isoelectric Point: 9.2521

>NTDB_id=40219 SOR_RS08355 WP_000240911.1 1682371..1682994(-) (comM) [Streptococcus oralis Uo5]
MVKSIRLLLLIAVVQISFSSCLLWKESFLSLKQTNAYFLILIVGISVLCAGINYFHTADQSRHSILHVQKKVSLVYCLLL
VVNLLATCLVLSESIQTTSKLQQELVDLFLPSFFFLLGVDLLIFLPFDKIFRDIENHLNKKKTVVISVLATMVFLRNPLV
ISSILIYISVGFLCARFLFPKCIQREISFYGHLIRDILFVFSIVVFF

Nucleotide


Download         Length: 624 bp        

>NTDB_id=40219 SOR_RS08355 WP_000240911.1 1682371..1682994(-) (comM) [Streptococcus oralis Uo5]
ATGGTAAAATCAATTCGCCTATTGTTACTGATTGCAGTCGTCCAGATTAGTTTTAGTAGTTGCCTATTATGGAAAGAATC
CTTTTTATCTTTAAAACAGACCAATGCTTATTTTTTGATTTTGATAGTAGGAATTTCTGTTCTCTGTGCTGGGATAAATT
ATTTCCATACAGCAGACCAGTCTAGGCACAGTATTTTACATGTTCAAAAGAAAGTGAGTCTAGTTTATTGCCTCCTTTTA
GTAGTCAATCTTTTGGCAACCTGTCTGGTTCTCTCAGAAAGCATCCAAACTACTAGCAAATTGCAACAAGAATTGGTTGA
CCTCTTTTTACCCTCCTTCTTTTTCTTGCTAGGAGTAGATCTATTGATTTTCTTACCTTTTGATAAAATTTTTCGCGATA
TAGAAAATCACCTAAATAAAAAGAAAACAGTCGTCATTTCCGTTCTAGCTACGATGGTTTTTTTGAGGAATCCCTTAGTG
ATTTCCTCGATTCTCATTTATATCAGTGTTGGTTTTCTATGCGCACGTTTCCTTTTTCCAAAATGTATTCAAAGGGAAAT
CTCCTTTTATGGGCACCTGATTCGGGATATCCTGTTTGTTTTTTCAATAGTTGTATTCTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Streptococcus pneumoniae D39

51.456

99.517

0.512
  comM Streptococcus pneumoniae R6

51.456

99.517

0.512
  comM Streptococcus pneumoniae TIGR4

51.456

99.517

0.512
  comM Streptococcus mitis NCTC 12261

40.609

95.169

0.386
  comM Streptococcus mitis SK321

40.609

95.169

0.386

Multiple sequence alignment