Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR/comR1   Type   Regulator
Locus tag   SSAL_RS03860 Genome accession   NC_017594
Coordinates   862178..863098 (-) Length   306 a.a.
NCBI ID   WP_014632992.1    Uniprot ID   -
Organism   Streptococcus salivarius 57.I     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 857178..868098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL_RS03840 (Ssal_00861) - 858523..859389 (+) 867 WP_014632988.1 hypothetical protein -
  SSAL_RS03845 (Ssal_00862) comR 859496..860404 (-) 909 WP_014632989.1 XRE family transcriptional regulator Regulator
  SSAL_RS03850 (Ssal_00863) - 860560..861276 (-) 717 WP_014632990.1 ABC transporter permease -
  SSAL_RS03855 (Ssal_00865) - 861269..862105 (-) 837 WP_014632991.1 ABC transporter ATP-binding protein -
  SSAL_RS03860 (Ssal_00866) comR/comR1 862178..863098 (-) 921 WP_014632992.1 XRE family transcriptional regulator Regulator
  SSAL_RS03865 (Ssal_00867) - 863316..863837 (+) 522 WP_004182334.1 RDD family protein -
  SSAL_RS03870 (Ssal_00868) - 863962..864882 (+) 921 WP_014632994.1 multidrug resistance efflux transporter family protein -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 36131.36 Da        Isoelectric Point: 4.4824

>NTDB_id=40171 SSAL_RS03860 WP_014632992.1 862178..863098(-) (comR/comR1) [Streptococcus salivarius 57.I]
MSEDIKIEIGKRIREERERQGLTREQVCDTEEELTVKQLMRIELGRSLPTIVKLQYISDKLSVSLNYLLGETKLDIPEDY
YKAKYKLMKSPVYGDSERIKKKLKDIEELYDNYIDVLPEDELLAIDLIERTLNFMISEEESLIESVFEDYLVQALKKETY
SLNDLLLISYYAFRCQDYDYDKERIEKFRRKLINQELQGEELFNVELIGALSAIAGIYVMHHDYKEMKSVVDKMYVLIDK
TLQQAYKPAVLVFEAKYYLFYENNRDKATELYNTATVLAEAFGDQVFIKNLKMEMENDLDTSNESK

Nucleotide


Download         Length: 921 bp        

>NTDB_id=40171 SSAL_RS03860 WP_014632992.1 862178..863098(-) (comR/comR1) [Streptococcus salivarius 57.I]
ATGTCAGAAGATATTAAAATCGAGATTGGAAAAAGAATTCGTGAAGAACGTGAACGTCAAGGGTTAACACGTGAGCAAGT
TTGTGATACCGAAGAAGAATTAACCGTCAAACAACTGATGAGAATTGAGCTTGGGCGTTCTTTACCAACTATTGTCAAAC
TTCAATACATCAGTGATAAATTGAGTGTTTCCCTCAACTATTTGTTAGGTGAAACAAAACTAGACATTCCTGAAGACTAT
TACAAGGCTAAATATAAACTTATGAAGTCTCCTGTCTATGGTGACTCGGAACGTATCAAGAAAAAGCTAAAAGATATTGA
GGAACTCTACGACAACTATATTGATGTGCTACCAGAGGACGAGCTTTTAGCTATTGATCTCATTGAAAGAACCCTGAATT
TTATGATTAGTGAGGAAGAAAGTCTTATTGAATCTGTATTTGAAGACTATTTGGTTCAAGCTTTGAAAAAAGAAACATAT
TCCTTAAATGACCTTCTATTAATTTCATACTATGCATTTCGATGTCAGGATTATGACTATGATAAAGAGAGAATTGAAAA
ATTTAGACGAAAATTAATTAATCAAGAATTACAAGGTGAAGAGCTGTTTAATGTTGAACTGATAGGTGCTTTATCAGCTA
TAGCTGGGATATATGTAATGCATCATGACTATAAAGAAATGAAGTCTGTTGTTGATAAAATGTATGTTCTTATTGATAAG
ACACTTCAACAAGCTTATAAACCCGCAGTACTTGTTTTTGAAGCGAAATATTATCTATTCTATGAGAACAATAGAGATAA
AGCAACCGAGCTCTATAATACAGCTACCGTACTAGCCGAAGCTTTTGGTGACCAAGTCTTCATCAAAAATCTTAAAATGG
AAATGGAAAATGATTTAGATACAAGTAACGAATCAAAGTGA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(77-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

40.339

96.405

0.389
  comR Streptococcus salivarius strain HSISS4

40.69

94.771

0.386
  comR Streptococcus thermophilus LMD-9

40.345

94.771

0.382
  comR Streptococcus thermophilus LMG 18311

40.345

94.771

0.382
  comR Streptococcus salivarius SK126

40.493

92.81

0.376
  comR/comR2 Streptococcus sobrinus strain NIDR 6715-7

38.832

95.098

0.369

Multiple sequence alignment