Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG/cglG   Type   Machinery gene
Locus tag   SOR_RS00860 Genome accession   NC_015291
Coordinates   165970..166383 (+) Length   137 a.a.
NCBI ID   WP_000265656.1    Uniprot ID   -
Organism   Streptococcus oralis Uo5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 160970..171383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS00825 (SOR_0168) - 162247..162612 (+) 366 WP_000286396.1 DUF1033 family protein -
  SOR_RS00830 (SOR_0169) comGA/cglA/cilD 162676..163617 (+) 942 WP_000249588.1 competence type IV pilus ATPase ComGA Machinery gene
  SOR_RS00835 (SOR_0170) comGB/cglB 163565..164581 (+) 1017 WP_000355374.1 competence type IV pilus assembly protein ComGB Machinery gene
  SOR_RS00840 (SOR_0171) comGC/cglC 164583..164906 (+) 324 WP_000735753.1 competence type IV pilus major pilin ComGC Machinery gene
  SOR_RS00845 (SOR_0172) comGD/cglD 164869..165303 (+) 435 WP_001180057.1 competence type IV pilus minor pilin ComGD Machinery gene
  SOR_RS00850 (SOR_0173) comGE/cglE 165266..165568 (+) 303 WP_000413375.1 competence type IV pilus minor pilin ComGE Machinery gene
  SOR_RS00855 (SOR_0174) comGF/cglF 165531..165992 (+) 462 WP_000250703.1 competence type IV pilus minor pilin ComGF Machinery gene
  SOR_RS00860 (SOR_0175) comGG/cglG 165970..166383 (+) 414 WP_000265656.1 competence type IV pilus minor pilin ComGG Machinery gene
  SOR_RS00865 (SOR_0176) - 166416..167006 (+) 591 WP_000679766.1 class I SAM-dependent methyltransferase -
  SOR_RS00870 (SOR_0177) comYH 167065..168018 (+) 954 WP_000345112.1 class I SAM-dependent methyltransferase Machinery gene
  SOR_RS00875 (SOR_0178) - 168069..169259 (+) 1191 WP_000167792.1 acetate kinase -
  SOR_RS00880 (SOR_0179) rnpA 169409..169780 (+) 372 WP_000748120.1 ribonuclease P protein component -
  SOR_RS00885 (SOR_0180) - 169755..170582 (+) 828 WP_332370225.1 membrane protein insertase YidC -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15704.24 Da        Isoelectric Point: 10.5658

>NTDB_id=40173 SOR_RS00860 WP_000265656.1 165970..166383(+) (comGG/cglG) [Streptococcus oralis Uo5]
MWKKQKVKAGVLLYAVTMAAIFSLLLQFYLNRQVAHYQDYALNKEKLAAFAMAKRSKDKVEQESGERVFNLGKVRYQNTK
TGFATSVRMNKGNYEFLFPPMKIQEKKIAKKEEVATDSSNQAGKKKSEEKPEKKANS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=40173 SOR_RS00860 WP_000265656.1 165970..166383(+) (comGG/cglG) [Streptococcus oralis Uo5]
GTGTGGAAAAAACAAAAAGTTAAGGCAGGCGTTCTTTTATATGCAGTCACCATGGCAGCCATTTTTAGCCTTTTGTTGCA
GTTTTATCTGAACCGGCAAGTTGCCCATTATCAAGACTACGCCTTGAACAAAGAAAAGTTGGCAGCTTTTGCCATGGCCA
AGCGAAGTAAAGATAAGGTTGAACAAGAAAGTGGGGAACGAGTCTTCAACTTAGGAAAAGTCAGGTATCAAAATACGAAA
ACAGGTTTTGCAACAAGTGTTCGTATGAATAAGGGCAACTATGAATTTCTCTTTCCTCCGATGAAAATCCAAGAAAAGAA
AATAGCTAAAAAGGAAGAGGTAGCGACTGATTCAAGCAATCAAGCAGGGAAGAAAAAATCAGAAGAAAAGCCTGAAAAGA
AAGCCAATTCCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis NCTC 12261

79.508

89.051

0.708
  comGG/cglG Streptococcus pneumoniae Rx1

81.197

85.401

0.693
  comGG/cglG Streptococcus pneumoniae D39

81.197

85.401

0.693
  comGG/cglG Streptococcus pneumoniae R6

81.197

85.401

0.693
  comGG/cglG Streptococcus pneumoniae TIGR4

81.197

85.401

0.693
  comGG/cglG Streptococcus mitis SK321

77.869

89.051

0.693

Multiple sequence alignment