Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | SOR_RS00870 | Genome accession | NC_015291 |
| Coordinates | 167065..168018 (+) | Length | 317 a.a. |
| NCBI ID | WP_000345112.1 | Uniprot ID | - |
| Organism | Streptococcus oralis Uo5 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 162065..173018
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SOR_RS00825 (SOR_0168) | - | 162247..162612 (+) | 366 | WP_000286396.1 | DUF1033 family protein | - |
| SOR_RS00830 (SOR_0169) | comGA/cglA/cilD | 162676..163617 (+) | 942 | WP_000249588.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SOR_RS00835 (SOR_0170) | comGB/cglB | 163565..164581 (+) | 1017 | WP_000355374.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| SOR_RS00840 (SOR_0171) | comGC/cglC | 164583..164906 (+) | 324 | WP_000735753.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| SOR_RS00845 (SOR_0172) | comGD/cglD | 164869..165303 (+) | 435 | WP_001180057.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| SOR_RS00850 (SOR_0173) | comGE/cglE | 165266..165568 (+) | 303 | WP_000413375.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| SOR_RS00855 (SOR_0174) | comGF/cglF | 165531..165992 (+) | 462 | WP_000250703.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| SOR_RS00860 (SOR_0175) | comGG/cglG | 165970..166383 (+) | 414 | WP_000265656.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| SOR_RS00865 (SOR_0176) | - | 166416..167006 (+) | 591 | WP_000679766.1 | class I SAM-dependent methyltransferase | - |
| SOR_RS00870 (SOR_0177) | comYH | 167065..168018 (+) | 954 | WP_000345112.1 | class I SAM-dependent methyltransferase | Machinery gene |
| SOR_RS00875 (SOR_0178) | - | 168069..169259 (+) | 1191 | WP_000167792.1 | acetate kinase | - |
| SOR_RS00880 (SOR_0179) | rnpA | 169409..169780 (+) | 372 | WP_000748120.1 | ribonuclease P protein component | - |
| SOR_RS00885 (SOR_0180) | - | 169755..170582 (+) | 828 | WP_332370225.1 | membrane protein insertase YidC | - |
| SOR_RS00890 (SOR_0181) | jag | 170597..171583 (+) | 987 | WP_000242584.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| SOR_RS00895 (SOR_0182) | - | 171639..172262 (+) | 624 | WP_000910057.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35571.59 Da Isoelectric Point: 4.1638
>NTDB_id=40174 SOR_RS00870 WP_000345112.1 167065..168018(+) (comYH) [Streptococcus oralis Uo5]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVLIVEELLNQEEISILEMGSGMGILGATFLTSLAKKVDYLGIEVDDLLIDLAASMSDVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAIASRYQVSSSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKGWLKDEVSLAAIIALPEDIFSTASQAKSIFVLQKKRDKEMEPFVYPLTSLQDPSVLLTFKENFQNWSKGTEI
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVLIVEELLNQEEISILEMGSGMGILGATFLTSLAKKVDYLGIEVDDLLIDLAASMSDVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAIASRYQVSSSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKGWLKDEVSLAAIIALPEDIFSTASQAKSIFVLQKKRDKEMEPFVYPLTSLQDPSVLLTFKENFQNWSKGTEI
Nucleotide
Download Length: 954 bp
>NTDB_id=40174 SOR_RS00870 WP_000345112.1 167065..168018(+) (comYH) [Streptococcus oralis Uo5]
ATGGATTTTGAAAAAATAGAACAAGCTTATACGTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTAGCGACCAA
CTTTTATGATGCCTTGGTAGAGCAAAATAGTATCTACCTAGATGGCGAGACCGAGTTGGAGCAGGTCAAGGAGAACAATC
AAGCCCTTAAGCGCTTAGCCCTTCGCAAGGAAGAGTGGCTCAAAACCTACCAGTTTCTCTTGATGAAGGCAGGGCAAACG
GAGCCTTTACAGGCTAATCACCAGTTTACGCCGGATGCCATTGCCCTCCTCTTGGTACTTATTGTGGAAGAGTTGCTGAA
TCAAGAGGAAATTAGCATCCTCGAAATGGGTTCTGGCATGGGGATTCTGGGCGCTACTTTCTTGACTTCTCTTGCTAAAA
AAGTAGATTACTTGGGAATCGAAGTGGATGACTTGCTGATTGATTTGGCAGCCAGTATGTCAGATGTGATTGGTTTACAA
GCTGGTTTTGTTCAAGGAGACGCCGTTCGTCCGCAAATGCTTAAAGAAAGCGACGTGGTCATCAGCGACTTGCCTGTTGG
CTATTACCCAGACGATGCCATCGCTTCGCGCTATCAAGTGTCTTCTAGTCAAGAGCATACCTATGCCCATCATTTGCTGA
TGGAACAAGGCCTCAAGTACCTTAAGTCAGATGGCTATGCTATTTTTCTAGCTCCGAGTGATTTATTGACCAGTCCTCAG
AGTGACTTATTAAAAGGGTGGCTCAAAGACGAAGTGAGTCTGGCTGCTATCATCGCTCTGCCAGAGGATATTTTCTCAAC
TGCAAGCCAAGCTAAAAGTATTTTTGTCTTACAGAAGAAAAGAGACAAGGAAATGGAACCCTTTGTTTACCCTCTTACTA
GCTTGCAAGATCCGTCAGTTTTGTTGACCTTTAAAGAAAATTTTCAAAATTGGAGCAAAGGTACTGAAATATAA
ATGGATTTTGAAAAAATAGAACAAGCTTATACGTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTAGCGACCAA
CTTTTATGATGCCTTGGTAGAGCAAAATAGTATCTACCTAGATGGCGAGACCGAGTTGGAGCAGGTCAAGGAGAACAATC
AAGCCCTTAAGCGCTTAGCCCTTCGCAAGGAAGAGTGGCTCAAAACCTACCAGTTTCTCTTGATGAAGGCAGGGCAAACG
GAGCCTTTACAGGCTAATCACCAGTTTACGCCGGATGCCATTGCCCTCCTCTTGGTACTTATTGTGGAAGAGTTGCTGAA
TCAAGAGGAAATTAGCATCCTCGAAATGGGTTCTGGCATGGGGATTCTGGGCGCTACTTTCTTGACTTCTCTTGCTAAAA
AAGTAGATTACTTGGGAATCGAAGTGGATGACTTGCTGATTGATTTGGCAGCCAGTATGTCAGATGTGATTGGTTTACAA
GCTGGTTTTGTTCAAGGAGACGCCGTTCGTCCGCAAATGCTTAAAGAAAGCGACGTGGTCATCAGCGACTTGCCTGTTGG
CTATTACCCAGACGATGCCATCGCTTCGCGCTATCAAGTGTCTTCTAGTCAAGAGCATACCTATGCCCATCATTTGCTGA
TGGAACAAGGCCTCAAGTACCTTAAGTCAGATGGCTATGCTATTTTTCTAGCTCCGAGTGATTTATTGACCAGTCCTCAG
AGTGACTTATTAAAAGGGTGGCTCAAAGACGAAGTGAGTCTGGCTGCTATCATCGCTCTGCCAGAGGATATTTTCTCAAC
TGCAAGCCAAGCTAAAAGTATTTTTGTCTTACAGAAGAAAAGAGACAAGGAAATGGAACCCTTTGTTTACCCTCTTACTA
GCTTGCAAGATCCGTCAGTTTTGTTGACCTTTAAAGAAAATTTTCAAAATTGGAGCAAAGGTACTGAAATATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
57.556 |
98.107 |
0.565 |
| comYH | Streptococcus mutans UA159 |
57.235 |
98.107 |
0.562 |