Detailed information NTG0401493

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: GKC13_RS00870
• Genome accession: NZ_CP046134
• Coordinates: 155050..155478 (+)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain MAG_rmk202_sterm
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 150050..160478

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GKC13_RS00850 (GKC13_00845)	-	152401..152763 (+)	363	WP_011226630.1	DUF1033 family protein	-
GKC13_RS00855 (GKC13_00850)	comGA/cglA/cilD	152844..153785 (+)	942	WP_071417491.1	competence type IV pilus ATPase ComGA	Machinery gene
GKC13_RS00860 (GKC13_00855)	comYB	153667..154767 (+)	1101	WP_207560111.1	competence type IV pilus assembly protein ComGB	Machinery gene
GKC13_RS00865 (GKC13_00860)	comYC	154764..155090 (+)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
GKC13_RS00870 (GKC13_00865)	comYD	155050..155478 (+)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
GKC13_RS00875 (GKC13_00870)	comGE	155450..155743 (+)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
GKC13_RS00880 (GKC13_00875)	comYF	155727..156164 (+)	438	WP_011681686.1	competence type IV pilus minor pilin ComGF	Machinery gene
GKC13_RS00885 (GKC13_00880)	comGG	156142..156459 (+)	318	WP_011681685.1	competence type IV pilus minor pilin ComGG	-
GKC13_RS00890 (GKC13_00885)	comYH	156504..157469 (+)	966	WP_208301810.1	class I SAM-dependent methyltransferase	Machinery gene
GKC13_RS00895 (GKC13_00890)	-	157515..158708 (+)	1194	WP_014608740.1	acetate kinase	-
GKC13_RS00900 (GKC13_00895)	-	158957..159154 (+)	198	WP_014727723.1	helix-turn-helix transcriptional regulator	-
GKC13_RS09810 (GKC13_00900)	-	159397..159822 (+)	426	WP_087010196.1	CPBP family intramembrane glutamic endopeptidase	-
GKC13_RS00910 (GKC13_00905)	-	159896..160339 (+)	444	WP_084829882.1	CAAX protease	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=401493 GKC13_RS00870 WP_011226626.1 155050..155478(+) (comYD) [Streptococcus thermophilus strain MAG_rmk202_sterm]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=401493 GKC13_RS00870 WP_011226626.1 155050..155478(+) (comYD) [Streptococcus thermophilus strain MAG_rmk202_sterm]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCGAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38