Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | GKC13_RS00890 | Genome accession | NZ_CP046134 |
| Coordinates | 156504..157469 (+) | Length | 321 a.a. |
| NCBI ID | WP_208301810.1 | Uniprot ID | - |
| Organism | Streptococcus thermophilus strain MAG_rmk202_sterm | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 151504..162469
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GKC13_RS00850 (GKC13_00845) | - | 152401..152763 (+) | 363 | WP_011226630.1 | DUF1033 family protein | - |
| GKC13_RS00855 (GKC13_00850) | comGA/cglA/cilD | 152844..153785 (+) | 942 | WP_071417491.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GKC13_RS00860 (GKC13_00855) | comYB | 153667..154767 (+) | 1101 | WP_207560111.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| GKC13_RS00865 (GKC13_00860) | comYC | 154764..155090 (+) | 327 | WP_002946126.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| GKC13_RS00870 (GKC13_00865) | comYD | 155050..155478 (+) | 429 | WP_011226626.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| GKC13_RS00875 (GKC13_00870) | comGE | 155450..155743 (+) | 294 | WP_011226625.1 | competence type IV pilus minor pilin ComGE | - |
| GKC13_RS00880 (GKC13_00875) | comYF | 155727..156164 (+) | 438 | WP_011681686.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| GKC13_RS00885 (GKC13_00880) | comGG | 156142..156459 (+) | 318 | WP_011681685.1 | competence type IV pilus minor pilin ComGG | - |
| GKC13_RS00890 (GKC13_00885) | comYH | 156504..157469 (+) | 966 | WP_208301810.1 | class I SAM-dependent methyltransferase | Machinery gene |
| GKC13_RS00895 (GKC13_00890) | - | 157515..158708 (+) | 1194 | WP_014608740.1 | acetate kinase | - |
| GKC13_RS00900 (GKC13_00895) | - | 158957..159154 (+) | 198 | WP_014727723.1 | helix-turn-helix transcriptional regulator | - |
| GKC13_RS09810 (GKC13_00900) | - | 159397..159822 (+) | 426 | WP_087010196.1 | CPBP family intramembrane glutamic endopeptidase | - |
| GKC13_RS00910 (GKC13_00905) | - | 159896..160339 (+) | 444 | WP_084829882.1 | CAAX protease | - |
| GKC13_RS00915 (GKC13_00910) | - | 160436..161098 (+) | 663 | WP_011227583.1 | type II CAAX endopeptidase family protein | - |
| GKC13_RS00920 (GKC13_00915) | - | 161174..162430 (-) | 1257 | WP_011681055.1 | ISL3-like element ISSth1 family transposase | - |
Sequence
Protein
Download Length: 321 a.a. Molecular weight: 36247.53 Da Isoelectric Point: 4.8760
>NTDB_id=401495 GKC13_RS00890 WP_208301810.1 156504..157469(+) (comYH) [Streptococcus thermophilus strain MAG_rmk202_sterm]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAEILLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKYIFVLKKQTKNAPETFVYPLSDLKNPRVLKDFTENFQKWKSDNSIFSK
T
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAEILLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKYIFVLKKQTKNAPETFVYPLSDLKNPRVLKDFTENFQKWKSDNSIFSK
T
Nucleotide
Download Length: 966 bp
>NTDB_id=401495 GKC13_RS00890 WP_208301810.1 156504..157469(+) (comYH) [Streptococcus thermophilus strain MAG_rmk202_sterm]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAATG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAATTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTATATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGAAAAATCCAAGGGTCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTTAGTAAA
ACATGA
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAATG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAATTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTATATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGAAAAATCCAAGGGTCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTTAGTAAA
ACATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
68.254 |
98.131 |
0.67 |
| comYH | Streptococcus mutans UA140 |
68.254 |
98.131 |
0.67 |