Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   GGC04_RS15300 Genome accession   NZ_CP046065
Coordinates   3291490..3292854 (-) Length   454 a.a.
NCBI ID   WP_152472360.1    Uniprot ID   -
Organism   Vibrio sp. THAF191d     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3286490..3297854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGC04_RS15280 (GGC04_15455) - 3287234..3288061 (-) 828 WP_006957149.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  GGC04_RS15285 (GGC04_15460) - 3288131..3289633 (-) 1503 WP_006957151.1 SPOR domain-containing protein -
  GGC04_RS15290 (GGC04_15465) aroB 3289675..3290763 (-) 1089 WP_006957153.1 3-dehydroquinate synthase -
  GGC04_RS15295 (GGC04_15470) aroK 3290795..3291313 (-) 519 WP_006957155.1 shikimate kinase AroK -
  GGC04_RS15300 (GGC04_15475) pilQ 3291490..3292854 (-) 1365 WP_152472360.1 type IV pilus secretin PilQ Machinery gene
  GGC04_RS15305 (GGC04_15480) - 3292867..3293379 (-) 513 WP_006957158.1 pilus assembly protein PilP -
  GGC04_RS15310 (GGC04_15485) pilO 3293369..3293959 (-) 591 WP_006957159.1 type 4a pilus biogenesis protein PilO -
  GGC04_RS15315 (GGC04_15490) - 3293952..3294509 (-) 558 WP_006957160.1 PilN domain-containing protein -
  GGC04_RS15320 (GGC04_15495) pilM 3294499..3295416 (-) 918 WP_006957161.1 pilus assembly protein PilM -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49260.46 Da        Isoelectric Point: 4.7001

>NTDB_id=400867 GGC04_RS15300 WP_152472360.1 3291490..3292854(-) (pilQ) [Vibrio sp. THAF191d]
MVFKKARLLGVLLFSLVITLNAASSEEMKHELEIEGKVSDKLSVNFQDIPVRQVLQQIADYNDFNLVVSDAVSGNLTLRV
KEVPWPQLLDIILRMKGLEKRMDGSVLLVATAAEIAQFRQQKLEQEKVTAELQPLESEIIAMRFAKAADIAALLSDSAAT
RMLSERGVISIDTRTNSLLIRDVAINIQAMKAIITALDVPVKQVQIEARIVSLNEGDLQELGVRWGFSSTNGSHSVGGSI
ENNLANLNLYGDSDSSLDDFLNVNLAATSVNASTIAFQVAKLGSDTLLDLELSALQRESRAEVISSPRLITTNKQPAYIE
QGTEIPYLEAASSGATSVNFKKAVLSLKVTPQITSDNRLILDLNVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGET
IVLGGIYQHSVSDTVDQVPLLGDIPLLGGLFRRTYQQMGKSELLIFVTPTVVAP

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=400867 GGC04_RS15300 WP_152472360.1 3291490..3292854(-) (pilQ) [Vibrio sp. THAF191d]
ATGGTTTTTAAGAAAGCAAGGTTGCTCGGTGTGCTGCTGTTTAGTTTGGTGATTACGCTTAATGCTGCAAGCAGTGAGGA
GATGAAGCATGAACTTGAGATAGAGGGAAAGGTGTCAGACAAGCTTTCCGTCAATTTTCAGGATATTCCGGTGCGCCAGG
TATTGCAGCAGATTGCGGATTACAACGATTTTAATCTGGTTGTGTCAGATGCCGTGTCTGGCAATCTGACCCTAAGAGTG
AAGGAGGTTCCGTGGCCACAGTTACTCGATATCATTTTGCGTATGAAGGGATTAGAGAAGCGCATGGATGGCAGTGTGTT
GCTGGTGGCAACGGCGGCTGAAATTGCTCAGTTCAGACAACAAAAGTTGGAACAGGAGAAAGTCACGGCTGAGCTTCAAC
CGTTAGAATCTGAGATTATCGCTATGAGGTTTGCCAAAGCGGCAGATATTGCGGCATTACTGAGCGATAGCGCTGCGACG
CGGATGTTGTCTGAACGAGGGGTGATTTCAATCGATACTCGAACCAATAGCCTGTTAATTCGCGATGTTGCTATCAATAT
TCAAGCGATGAAGGCGATCATTACGGCATTAGATGTGCCGGTGAAACAAGTACAAATTGAGGCGCGCATAGTCAGCTTGA
ATGAAGGTGATTTACAGGAGTTGGGTGTGCGTTGGGGGTTCAGTTCGACCAACGGCAGTCACAGTGTGGGAGGCTCGATA
GAAAATAACTTAGCCAATCTCAATCTGTATGGGGATTCGGACTCGTCACTGGACGATTTTCTCAACGTCAACTTAGCGGC
GACGTCCGTGAACGCTTCGACGATTGCTTTTCAGGTCGCTAAGCTGGGCAGTGACACTTTACTGGATTTAGAATTGTCAG
CGTTGCAAAGGGAATCGAGAGCAGAAGTTATATCCAGTCCGCGTCTGATTACCACCAACAAGCAACCTGCTTACATTGAG
CAGGGGACTGAAATTCCTTATTTAGAGGCGGCCTCAAGCGGTGCAACCAGCGTGAATTTTAAAAAAGCAGTGTTAAGTTT
AAAAGTCACCCCGCAAATCACATCGGATAACCGTTTGATTCTGGATCTGAATGTCACCCAAGATAGGCCGGGTCAAGTGG
TCAAAACCGGCACTGGGGAAGCTGTTGCGATAGACACGCAACGTATCGGTACTCAGGTACTGGTCAATAATGGCGAAACC
ATTGTTCTGGGAGGCATTTATCAGCACAGTGTTTCGGATACGGTCGATCAGGTTCCGTTGTTAGGCGACATTCCTTTGCT
AGGTGGGCTTTTTCGACGAACTTATCAGCAAATGGGTAAGAGCGAGTTGTTGATTTTTGTAACGCCAACAGTGGTTGCGC
CTTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(138-203)

Bacterial type II and III secretion system protein (Secretin)

(294-452)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

68.502

100

0.685
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

68.764

98.018

0.674
  pilQ Vibrio cholerae strain A1552

68.764

98.018

0.674
  pilQ Legionella pneumophila strain Lp02

45.413

96.035

0.436
  pilQ Legionella pneumophila strain ERS1305867

45.413

96.035

0.436
  comQ Acinetobacter baylyi ADP1

42.664

97.577

0.416
  pilQ Pseudomonas aeruginosa PAK

43.721

94.714

0.414
  pilQ Acinetobacter baumannii D1279779

37.422

100

0.396
  pilQ Acinetobacter baumannii strain A118

37.422

100

0.396
  comE Haemophilus influenzae 86-028NP

42.365

89.427

0.379
  comE Haemophilus influenzae Rd KW20

41.007

91.85

0.377

Multiple sequence alignment