Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   GJV52_RS03360 Genome accession   NZ_CP046027
Coordinates   662527..663768 (-) Length   413 a.a.
NCBI ID   WP_095501902.1    Uniprot ID   -
Organism   Neisseria brasiliensis strain N.177.16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 657527..668768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV52_RS03335 (GJV52_03335) lspA 659290..659790 (+) 501 WP_095501897.1 signal peptidase II -
  GJV52_RS03340 (GJV52_03340) ispH 659815..660783 (+) 969 WP_095501898.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  GJV52_RS03345 (GJV52_03345) yacG 660865..661050 (-) 186 WP_095501899.1 DNA gyrase inhibitor YacG -
  GJV52_RS03350 (GJV52_03350) coaE 661053..661661 (-) 609 WP_100562515.1 dephospho-CoA kinase -
  GJV52_RS03355 (GJV52_03355) pilD 661662..662525 (-) 864 WP_095501901.1 A24 family peptidase Machinery gene
  GJV52_RS03360 (GJV52_03360) pilG 662527..663768 (-) 1242 WP_095501902.1 type II secretion system F family protein Machinery gene
  GJV52_RS03365 (GJV52_03365) pilF 663843..665522 (-) 1680 WP_100562517.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GJV52_RS03375 (GJV52_03375) - 666189..666755 (+) 567 WP_095501904.1 hypothetical protein -
  GJV52_RS03380 (GJV52_03380) groL 666881..668515 (-) 1635 WP_100562519.1 chaperonin GroEL -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45767.90 Da        Isoelectric Point: 9.8439

>NTDB_id=400309 GJV52_RS03360 WP_095501902.1 662527..663768(-) (pilG) [Neisseria brasiliensis strain N.177.16]
MAQAEQKKGLFTQKSKGKRFTFEGKNTHTDQVVHGEVVAKDEEEARKKLQRRGIRPLRISKVKAVRKRRITQEDITVFTR
QLATMMKAGLPLMQAFEIVARGHSNPAMTQMLMQIRAEVEQGSALGKSFAKYPKYFDRFYCNLVSAGETGGVLEGLLDKL
AVYKEKTQAIKKKVKTALTYPISIVVVAVILMFIMMMFVLPAFKEVYSNMGAELPWLTQVVMNISDLFVEYGWIMIIGLI
LIGFGVYKLHQNSPAFQKRVDATLLKLPVFGPIVKKATIARWSRTTSTLFAAGVPLVEVLDSVAGASGNILYEEATQDIR
AKVTQGLSLTSSMQATEMFPNMVIQMASIGEESGSLDDMLNKAAEFYEDEVDNSVAQLSSLMEPIIMVVLGSLIGVLLVA
MYLPLFNLGNVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=400309 GJV52_RS03360 WP_095501902.1 662527..663768(-) (pilG) [Neisseria brasiliensis strain N.177.16]
ATGGCTCAAGCAGAGCAAAAAAAGGGTTTGTTCACCCAAAAGAGCAAAGGTAAACGTTTTACATTCGAAGGTAAAAATAC
CCATACCGATCAAGTGGTTCACGGCGAAGTAGTGGCGAAAGACGAAGAAGAGGCGCGTAAAAAGCTTCAGCGTCGCGGTA
TCCGTCCGTTGCGTATCAGTAAGGTGAAAGCGGTGCGCAAACGCCGCATCACGCAAGAAGACATCACAGTCTTTACCCGA
CAATTGGCAACCATGATGAAAGCCGGTCTGCCTTTGATGCAGGCTTTTGAAATTGTGGCACGTGGCCACTCAAACCCTGC
GATGACACAAATGCTGATGCAAATTCGTGCGGAAGTAGAGCAGGGTAGTGCATTAGGTAAATCGTTTGCCAAATACCCGA
AATATTTCGACCGATTCTATTGCAACTTGGTTTCTGCCGGTGAAACCGGTGGTGTACTGGAAGGCTTGCTGGATAAGTTG
GCGGTTTATAAAGAGAAAACGCAAGCCATTAAGAAAAAAGTGAAAACTGCGCTGACCTACCCGATTTCGATTGTGGTGGT
GGCGGTGATCTTGATGTTTATCATGATGATGTTTGTGTTGCCGGCATTTAAAGAAGTATATAGCAACATGGGCGCCGAAT
TGCCTTGGTTGACTCAGGTAGTGATGAATATCTCTGATTTATTTGTCGAATATGGCTGGATTATGATTATCGGCCTAATT
TTAATCGGCTTTGGGGTGTATAAGCTGCATCAAAATTCGCCGGCCTTTCAGAAACGCGTCGACGCCACGTTGCTTAAACT
ACCGGTTTTTGGCCCTATTGTAAAAAAAGCAACGATTGCACGCTGGTCACGCACAACTTCTACCTTGTTTGCGGCAGGCG
TACCGTTGGTAGAAGTTTTAGATTCGGTGGCAGGTGCCTCCGGTAATATTTTGTATGAAGAGGCTACACAGGACATTCGC
GCCAAAGTGACGCAAGGTTTGTCGCTGACTTCCAGTATGCAGGCTACTGAAATGTTCCCGAATATGGTGATTCAGATGGC
CTCTATTGGTGAGGAATCTGGCTCTTTGGATGATATGTTGAATAAAGCTGCTGAATTTTATGAAGATGAAGTAGATAACT
CTGTTGCGCAATTATCTTCGTTGATGGAGCCAATTATCATGGTGGTATTGGGTTCGTTAATCGGCGTGTTGCTGGTGGCG
ATGTACTTGCCGCTGTTTAACTTGGGCAACGTGGTGGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(78-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria meningitidis 44/76-A

70.69

98.305

0.695
  pilG Neisseria gonorrhoeae MS11

71.216

97.579

0.695
  pilC Acinetobacter baumannii D1279779

46.482

96.368

0.448
  pilC Legionella pneumophila strain ERS1305867

46.599

96.126

0.448
  pilC Pseudomonas stutzeri DSM 10701

45.636

97.094

0.443
  pilC Acinetobacter baylyi ADP1

45.25

96.852

0.438
  pilC Vibrio cholerae strain A1552

40.196

98.789

0.397
  pilC Vibrio campbellii strain DS40M4

37.313

97.337

0.363

Multiple sequence alignment