Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   HUF04_RS31160 Genome accession   NZ_CP054581
Coordinates   6552660..6553184 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain YTSEY8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6547660..6558184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUF04_RS31145 (HUF04_31190) aroB 6548776..6549882 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  HUF04_RS31150 (HUF04_31195) aroK 6549932..6550450 (-) 519 WP_003095833.1 shikimate kinase AroK -
  HUF04_RS31155 (HUF04_31200) pilQ 6550462..6552606 (-) 2145 WP_034039637.1 type 4a pilus secretin PilQ Machinery gene
  HUF04_RS31160 (HUF04_31205) comL/pilP 6552660..6553184 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  HUF04_RS31165 (HUF04_31210) pilO 6553181..6553804 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  HUF04_RS31170 (HUF04_31215) pilN 6553801..6554397 (-) 597 WP_031671448.1 type 4a pilus biogenesis protein PilN Machinery gene
  HUF04_RS31175 (HUF04_31220) pilM 6554397..6555461 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  HUF04_RS31180 (HUF04_31225) - 6555646..6558117 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=400308 HUF04_RS31160 WP_003095836.1 6552660..6553184(-) (comL/pilP) [Pseudomonas aeruginosa strain YTSEY8]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=400308 HUF04_RS31160 WP_003095836.1 6552660..6553184(-) (comL/pilP) [Pseudomonas aeruginosa strain YTSEY8]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
TCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362

Multiple sequence alignment