Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   GJV52_RS03355 Genome accession   NZ_CP046027
Coordinates   661662..662525 (-) Length   287 a.a.
NCBI ID   WP_095501901.1    Uniprot ID   -
Organism   Neisseria brasiliensis strain N.177.16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 656662..667525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV52_RS03335 (GJV52_03335) lspA 659290..659790 (+) 501 WP_095501897.1 signal peptidase II -
  GJV52_RS03340 (GJV52_03340) ispH 659815..660783 (+) 969 WP_095501898.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  GJV52_RS03345 (GJV52_03345) yacG 660865..661050 (-) 186 WP_095501899.1 DNA gyrase inhibitor YacG -
  GJV52_RS03350 (GJV52_03350) coaE 661053..661661 (-) 609 WP_100562515.1 dephospho-CoA kinase -
  GJV52_RS03355 (GJV52_03355) pilD 661662..662525 (-) 864 WP_095501901.1 A24 family peptidase Machinery gene
  GJV52_RS03360 (GJV52_03360) pilG 662527..663768 (-) 1242 WP_095501902.1 type II secretion system F family protein Machinery gene
  GJV52_RS03365 (GJV52_03365) pilF 663843..665522 (-) 1680 WP_100562517.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GJV52_RS03375 (GJV52_03375) - 666189..666755 (+) 567 WP_095501904.1 hypothetical protein -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31537.65 Da        Isoelectric Point: 8.4513

>NTDB_id=400308 GJV52_RS03355 WP_095501901.1 661662..662525(-) (pilD) [Neisseria brasiliensis strain N.177.16]
MLETWNALAPFVVPLAVIFGLLIGSFLNVVIYRIPVMMERGWTQFAKEHLNVPLTAEEEVPFTLSKPDSRCPKCHAPVKA
WQNIPMVSYLLLGGKCSSCKTPISIRYPLVELLTGILFGVVAWQYGWSWLTFGGLIFTAMLVALTFIDYDTQYLPDSLTL
PLVWLGLLYNYNGAFTTLQSAVLGAVCGYMSLWLLCYVYKLLTGKIGMGGGDFKLLAALGAWLGVGVLPVLVFMAALIGI
IGALVSRVGKGRQFAFGPSLAVAGWIIFIANEPINQLIQWWLTKSGF

Nucleotide


Download         Length: 864 bp        

>NTDB_id=400308 GJV52_RS03355 WP_095501901.1 661662..662525(-) (pilD) [Neisseria brasiliensis strain N.177.16]
ATGCTGGAAACTTGGAATGCCTTAGCCCCGTTTGTTGTGCCATTGGCGGTGATTTTCGGTTTATTAATCGGCAGCTTTTT
GAATGTGGTGATTTATCGCATTCCTGTGATGATGGAGCGCGGTTGGACGCAATTTGCCAAAGAGCATTTGAATGTGCCGC
TTACGGCCGAAGAAGAAGTACCGTTTACATTGTCGAAACCGGATTCACGCTGCCCGAAATGTCATGCGCCGGTGAAGGCT
TGGCAGAATATTCCGATGGTGAGTTATTTGCTGTTGGGTGGCAAATGTAGCTCATGTAAAACACCCATCAGCATCCGCTA
TCCTTTGGTGGAATTACTTACCGGCATCTTATTTGGTGTTGTGGCATGGCAATACGGCTGGTCGTGGCTGACATTTGGCG
GCTTGATTTTTACCGCCATGCTGGTTGCGCTCACTTTTATCGACTACGATACCCAATACCTACCCGATTCCCTGACCTTG
CCGCTGGTGTGGCTGGGTTTACTGTATAACTACAACGGCGCATTTACCACGCTTCAGTCGGCGGTATTGGGCGCGGTTTG
CGGTTATATGAGTTTGTGGTTGCTGTGTTACGTCTATAAATTGTTAACCGGTAAAATCGGTATGGGCGGCGGCGACTTTA
AATTATTGGCCGCACTGGGTGCATGGCTGGGTGTCGGCGTGTTGCCGGTATTGGTGTTTATGGCGGCCTTAATCGGCATT
ATCGGCGCGCTTGTGTCACGCGTCGGCAAAGGGCGGCAGTTTGCCTTTGGCCCAAGCTTGGCGGTGGCCGGATGGATTAT
TTTTATTGCCAATGAACCGATTAACCAATTGATTCAATGGTGGCTAACGAAATCAGGATTTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(136-242)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

71.326

97.213

0.693
  pilD Vibrio cholerae strain A1552

46.429

97.561

0.453
  pilD Acinetobacter nosocomialis M2

49.231

90.592

0.446
  pilD Acinetobacter baumannii D1279779

48.462

90.592

0.439
  pilD Vibrio campbellii strain DS40M4

45.126

96.516

0.436

Multiple sequence alignment