Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   HUF04_RS31170 Genome accession   NZ_CP054581
Coordinates   6553801..6554397 (-) Length   198 a.a.
NCBI ID   WP_031671448.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain YTSEY8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6548801..6559397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUF04_RS31150 (HUF04_31195) aroK 6549932..6550450 (-) 519 WP_003095833.1 shikimate kinase AroK -
  HUF04_RS31155 (HUF04_31200) pilQ 6550462..6552606 (-) 2145 WP_034039637.1 type 4a pilus secretin PilQ Machinery gene
  HUF04_RS31160 (HUF04_31205) comL/pilP 6552660..6553184 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  HUF04_RS31165 (HUF04_31210) pilO 6553181..6553804 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  HUF04_RS31170 (HUF04_31215) pilN 6553801..6554397 (-) 597 WP_031671448.1 type 4a pilus biogenesis protein PilN Machinery gene
  HUF04_RS31175 (HUF04_31220) pilM 6554397..6555461 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  HUF04_RS31180 (HUF04_31225) - 6555646..6558117 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22183.52 Da        Isoelectric Point: 10.0895

>NTDB_id=400310 HUF04_RS31170 WP_031671448.1 6553801..6554397(-) (pilN) [Pseudomonas aeruginosa strain YTSEY8]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPALNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=400310 HUF04_RS31170 WP_031671448.1 6553801..6554397(-) (pilN) [Pseudomonas aeruginosa strain YTSEY8]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGGCCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369

Multiple sequence alignment