Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SGLY_RS16775 Genome accession   NC_015172
Coordinates   3390995..3391399 (-) Length   134 a.a.
NCBI ID   WP_013626338.1    Uniprot ID   -
Organism   Syntrophobotulus glycolicus DSM 8271     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3385995..3396399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGLY_RS16750 (Sgly_3346) lonC 3386918..3388840 (-) 1923 WP_013626333.1 Lon family ATP-dependent protease -
  SGLY_RS16755 (Sgly_3347) rplI 3388848..3389294 (-) 447 WP_013626334.1 50S ribosomal protein L9 -
  SGLY_RS16760 (Sgly_3348) - 3389291..3390256 (-) 966 WP_013626335.1 DUF2232 domain-containing protein -
  SGLY_RS16765 (Sgly_3349) - 3390269..3390583 (-) 315 WP_242822961.1 MazG-like family protein -
  SGLY_RS16770 (Sgly_3350) rpsR 3390701..3390946 (-) 246 WP_013626337.1 30S ribosomal protein S18 -
  SGLY_RS16775 (Sgly_3351) ssbA 3390995..3391399 (-) 405 WP_013626338.1 single-stranded DNA-binding protein Machinery gene
  SGLY_RS16780 (Sgly_3352) rpsF 3391415..3391699 (-) 285 WP_013626339.1 30S ribosomal protein S6 -
  SGLY_RS16785 (Sgly_3353) ychF 3391807..3392907 (-) 1101 WP_013626340.1 redox-regulated ATPase YchF -
  SGLY_RS16790 (Sgly_3354) - 3393012..3393221 (-) 210 WP_013626341.1 DUF951 domain-containing protein -
  SGLY_RS16795 (Sgly_3355) - 3393247..3393918 (-) 672 WP_013626342.1 CvpA family protein -
  SGLY_RS16800 (Sgly_3356) - 3394002..3395186 (-) 1185 WP_013626343.1 ABC transporter substrate-binding protein -
  SGLY_RS16805 (Sgly_3357) - 3395327..3395572 (+) 246 WP_013626344.1 DUF3343 domain-containing protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14858.72 Da        Isoelectric Point: 5.2459

>NTDB_id=39959 SGLY_RS16775 WP_013626338.1 3390995..3391399(-) (ssbA) [Syntrophobotulus glycolicus DSM 8271]
MLNRVVLIGRLTKDPELRYTPSGVAVASFTLAVDRNYKNAKGERETDFISCVVYRQLAELCANYLAKGRIAAVDGRLQIR
TYDGQDGQRRWVTEVVGENVRFLSPKDGNTAGSGAADDIRSFAQEISLDDDIPF

Nucleotide


Download         Length: 405 bp        

>NTDB_id=39959 SGLY_RS16775 WP_013626338.1 3390995..3391399(-) (ssbA) [Syntrophobotulus glycolicus DSM 8271]
ATGTTAAATCGAGTAGTTTTGATCGGTCGATTAACGAAAGACCCCGAATTGCGTTATACACCCAGTGGAGTGGCTGTGGC
CTCTTTCACTCTCGCTGTCGACAGAAACTATAAAAACGCCAAGGGAGAACGGGAAACCGATTTTATCTCTTGTGTGGTTT
ACCGCCAGTTGGCTGAGCTTTGTGCCAATTATTTGGCGAAAGGGCGAATTGCTGCGGTAGACGGGCGCTTGCAGATCCGT
ACTTATGATGGGCAAGACGGACAGCGAAGATGGGTAACAGAAGTTGTCGGGGAAAACGTCAGGTTTTTAAGTCCTAAAGA
CGGTAATACCGCAGGTTCAGGGGCGGCGGATGATATAAGATCGTTTGCTCAGGAAATTAGTTTGGATGACGATATACCGT
TTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

66.355

79.851

0.53
  ssb Latilactobacillus sakei subsp. sakei 23K

51.22

91.791

0.47
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.887

79.104

0.41
  ssbB/cilA Streptococcus pneumoniae TIGR4

38.849

100

0.403
  ssbB/cilA Streptococcus mitis NCTC 12261

38.129

100

0.396
  ssbB/cilA Streptococcus mitis SK321

38.129

100

0.396
  ssbB/cilA Streptococcus pneumoniae Rx1

38.129

100

0.396
  ssbB/cilA Streptococcus pneumoniae D39

38.129

100

0.396
  ssbB/cilA Streptococcus pneumoniae R6

38.129

100

0.396
  ssbB Streptococcus sobrinus strain NIDR 6715-7

36.296

100

0.366

Multiple sequence alignment